Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03935 and PS417_03940 overlap by 4 nucleotides PS417_03940 and PS417_03945 are separated by 113 nucleotides PS417_03945 and PS417_03950 are separated by 126 nucleotides PS417_03950 and PS417_03955 overlap by 54 nucleotides
PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978
_03935
PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811
_03940
PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955
_03945
PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513
_03950
PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236
_03955
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 880.003 kb on + strand at 880.136 kb on - strand, within PS417_03940 at 880.136 kb on - strand, within PS417_03940 at 880.139 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand at 880.492 kb on - strand, within PS417_03940 at 880.817 kb on + strand at 880.831 kb on + strand at 880.832 kb on - strand at 880.832 kb on - strand at 880.861 kb on + strand at 880.861 kb on + strand at 880.862 kb on - strand at 880.862 kb on - strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.919 kb on + strand at 881.033 kb on + strand at 881.034 kb on - strand at 881.034 kb on - strand at 881.034 kb on - strand at 881.036 kb on + strand at 881.037 kb on - strand at 881.037 kb on - strand at 881.037 kb on - strand at 881.819 kb on + strand, within PS417_03945 at 881.819 kb on + strand, within PS417_03945 at 881.893 kb on + strand, within PS417_03945 at 881.894 kb on - strand, within PS417_03945 at 881.894 kb on - strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.948 kb on + strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.949 kb on - strand, within PS417_03945 at 881.960 kb on + strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 881.961 kb on - strand, within PS417_03945 at 882.007 kb on + strand, within PS417_03945 at 882.408 kb on + strand, within PS417_03945 at 882.679 kb on + strand, within PS417_03945 at 882.967 kb on - strand at 883.126 kb on + strand at 883.135 kb on + strand, within PS417_03950 at 883.136 kb on - strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.461 kb on + strand at 883.590 kb on + strand, within PS417_03955 at 883.629 kb on - strand, within PS417_03955 at 883.732 kb on - strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 880,003 + -2.6 880,136 - PS417_03940 0.19 +0.3 880,136 - PS417_03940 0.19 -0.0 880,139 - PS417_03940 0.20 +0.8 880,231 - PS417_03940 0.31 -2.9 880,231 - PS417_03940 0.31 +0.3 880,231 - PS417_03940 0.31 -0.7 880,231 - +0.3 880,492 - PS417_03940 0.62 -2.8 880,817 + -0.5 880,831 + -0.4 880,832 - +0.1 880,832 - +0.1 880,861 + -1.8 880,861 + -0.5 880,862 - +0.8 880,862 - +1.1 880,863 + -2.2 880,863 + -1.6 880,863 + +1.2 880,863 + -0.3 880,864 - +0.7 880,864 - +0.7 880,864 - -0.6 880,864 - -0.6 880,864 - -1.0 880,919 + +1.1 881,033 + +1.7 881,034 - +1.9 881,034 - -1.9 881,034 - +0.9 881,036 + -1.7 881,037 - +0.3 881,037 - -0.9 881,037 - +0.1 881,819 + PS417_03945 0.44 -0.8 881,819 + PS417_03945 0.44 +0.3 881,893 + PS417_03945 0.48 -1.4 881,894 - PS417_03945 0.48 +0.6 881,894 - PS417_03945 0.48 -3.5 881,948 + PS417_03945 0.50 +1.8 881,948 + PS417_03945 0.50 +0.3 881,948 + PS417_03945 0.50 -1.1 881,948 + PS417_03945 0.50 -0.8 881,948 + PS417_03945 0.50 -2.0 881,948 + PS417_03945 0.50 -0.9 881,948 + PS417_03945 0.50 +0.3 881,948 + PS417_03945 0.50 +1.3 881,949 - PS417_03945 0.50 -2.5 881,949 - PS417_03945 0.50 -0.0 881,949 - -1.0 881,949 - PS417_03945 0.50 +1.5 881,949 - PS417_03945 0.50 -3.2 881,949 - PS417_03945 0.50 -0.4 881,960 + PS417_03945 0.51 -0.7 881,961 - PS417_03945 0.51 -1.5 881,961 - PS417_03945 0.51 -0.2 881,961 - PS417_03945 0.51 -1.0 881,961 - PS417_03945 0.51 -1.0 882,007 + PS417_03945 0.53 -1.7 882,408 + PS417_03945 0.73 +1.9 882,679 + PS417_03945 0.86 -1.2 882,967 - +0.4 883,126 + +2.1 883,135 + PS417_03950 0.12 +0.0 883,136 - PS417_03950 0.12 -0.3 883,380 + PS417_03950 0.69 -1.0 883,380 + PS417_03950 0.69 +0.2 883,381 - PS417_03950 0.69 +0.5 883,381 - PS417_03950 0.69 -0.5 883,381 - PS417_03950 0.69 -3.9 883,381 - PS417_03950 0.69 -1.5 883,381 - PS417_03950 0.69 -1.8 883,461 + -0.4 883,590 + PS417_03955 0.17 +1.0 883,629 - PS417_03955 0.22 -1.4 883,732 - PS417_03955 0.35 -3.3 883,932 + PS417_03955 0.61 +0.1 883,932 + PS417_03955 0.61 +1.6
Or see this region's nucleotide sequence