Strain Fitness in Pseudomonas simiae WCS417 around PS417_03235

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03225 and PS417_03230 are separated by 12 nucleotidesPS417_03230 and PS417_03235 are separated by 87 nucleotidesPS417_03235 and PS417_03240 are separated by 88 nucleotides PS417_03225: PS417_03225 - thymidylate synthase, at 737,169 to 737,750 _03225 PS417_03230: PS417_03230 - TetR family transcriptional regulator, at 737,763 to 738,422 _03230 PS417_03235: PS417_03235 - xanthine permease XanP, at 738,510 to 739,904 _03235 PS417_03240: PS417_03240 - LysR family transcriptional regulator, at 739,993 to 740,913 _03240 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 737.530 kb on - strand, within PS417_03225at 737.688 kb on - strand, within PS417_03225at 737.688 kb on - strand, within PS417_03225at 737.706 kb on + strandat 737.750 kb on + strandat 737.751 kb on - strandat 737.813 kb on + strandat 737.893 kb on + strand, within PS417_03230at 738.197 kb on + strand, within PS417_03230at 738.197 kb on + strand, within PS417_03230at 738.198 kb on - strand, within PS417_03230at 738.212 kb on + strand, within PS417_03230at 738.212 kb on + strand, within PS417_03230at 738.214 kb on + strand, within PS417_03230at 738.214 kb on + strand, within PS417_03230at 738.214 kb on + strand, within PS417_03230at 738.215 kb on - strand, within PS417_03230at 738.238 kb on + strand, within PS417_03230at 738.239 kb on - strandat 738.239 kb on - strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.241 kb on + strand, within PS417_03230at 738.242 kb on - strand, within PS417_03230at 738.242 kb on - strand, within PS417_03230at 738.463 kb on + strandat 738.502 kb on + strandat 738.582 kb on + strandat 738.659 kb on + strand, within PS417_03235at 738.890 kb on + strand, within PS417_03235at 738.892 kb on + strand, within PS417_03235at 738.892 kb on + strand, within PS417_03235at 738.892 kb on + strand, within PS417_03235at 738.893 kb on - strand, within PS417_03235at 738.893 kb on - strand, within PS417_03235at 738.893 kb on - strand, within PS417_03235at 738.893 kb on - strand, within PS417_03235at 738.893 kb on - strand, within PS417_03235at 738.894 kb on + strand, within PS417_03235at 738.894 kb on + strand, within PS417_03235at 738.894 kb on + strand, within PS417_03235at 738.894 kb on + strand, within PS417_03235at 738.895 kb on - strand, within PS417_03235at 738.895 kb on - strand, within PS417_03235at 738.959 kb on + strand, within PS417_03235at 739.026 kb on - strand, within PS417_03235at 739.035 kb on + strand, within PS417_03235at 739.035 kb on + strand, within PS417_03235at 739.036 kb on - strand, within PS417_03235at 739.037 kb on + strand, within PS417_03235at 739.037 kb on + strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.038 kb on - strand, within PS417_03235at 739.039 kb on + strand, within PS417_03235at 739.039 kb on + strand, within PS417_03235at 739.039 kb on + strand, within PS417_03235at 739.040 kb on - strand, within PS417_03235at 739.040 kb on - strand, within PS417_03235at 739.040 kb on - strand, within PS417_03235at 739.109 kb on + strand, within PS417_03235at 739.121 kb on - strand, within PS417_03235at 739.332 kb on + strand, within PS417_03235at 739.333 kb on - strand, within PS417_03235at 739.695 kb on - strand, within PS417_03235at 739.698 kb on + strand, within PS417_03235at 739.698 kb on + strand, within PS417_03235at 739.698 kb on + strand, within PS417_03235at 739.733 kb on - strand, within PS417_03235at 739.809 kb on + strandat 739.868 kb on - strandat 739.868 kb on - strandat 740.240 kb on + strand, within PS417_03240at 740.240 kb on + strand, within PS417_03240at 740.323 kb on - strand, within PS417_03240at 740.333 kb on + strand, within PS417_03240at 740.334 kb on - strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.440 kb on + strand, within PS417_03240at 740.441 kb on - strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.659 kb on + strand, within PS417_03240at 740.737 kb on + strand, within PS417_03240

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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737,530 - PS417_03225 0.62 -0.6
737,688 - PS417_03225 0.89 -1.2
737,688 - PS417_03225 0.89 -1.4
737,706 + -1.3
737,750 + +0.1
737,751 - -2.0
737,813 + -1.2
737,893 + PS417_03230 0.20 +1.4
738,197 + PS417_03230 0.66 -0.4
738,197 + PS417_03230 0.66 -0.0
738,198 - PS417_03230 0.66 +1.5
738,212 + PS417_03230 0.68 -1.2
738,212 + PS417_03230 0.68 +0.7
738,214 + PS417_03230 0.68 -3.5
738,214 + PS417_03230 0.68 +0.2
738,214 + PS417_03230 0.68 +0.6
738,215 - PS417_03230 0.68 -2.8
738,238 + PS417_03230 0.72 -2.1
738,239 - -0.2
738,239 - PS417_03230 0.72 -2.2
738,241 + PS417_03230 0.72 -1.4
738,241 + PS417_03230 0.72 -0.2
738,241 + PS417_03230 0.72 -3.2
738,241 + PS417_03230 0.72 -0.2
738,241 + PS417_03230 0.72 +0.8
738,242 - PS417_03230 0.73 +1.3
738,242 - PS417_03230 0.73 +1.4
738,463 + -0.1
738,502 + -0.4
738,582 + +3.3
738,659 + PS417_03235 0.11 +0.8
738,890 + PS417_03235 0.27 +0.4
738,892 + PS417_03235 0.27 -0.3
738,892 + PS417_03235 0.27 -1.6
738,892 + PS417_03235 0.27 +1.8
738,893 - PS417_03235 0.27 +0.9
738,893 - PS417_03235 0.27 -2.7
738,893 - PS417_03235 0.27 +0.9
738,893 - PS417_03235 0.27 -0.8
738,893 - PS417_03235 0.27 -2.4
738,894 + PS417_03235 0.28 -2.9
738,894 + PS417_03235 0.28 +4.0
738,894 + PS417_03235 0.28 -0.1
738,894 + PS417_03235 0.28 -2.2
738,895 - PS417_03235 0.28 -0.2
738,895 - PS417_03235 0.28 -3.4
738,959 + PS417_03235 0.32 +1.7
739,026 - PS417_03235 0.37 +0.5
739,035 + PS417_03235 0.38 +0.2
739,035 + PS417_03235 0.38 +1.5
739,036 - PS417_03235 0.38 -2.3
739,037 + PS417_03235 0.38 +2.1
739,037 + PS417_03235 0.38 +2.6
739,038 - PS417_03235 0.38 +0.7
739,038 - PS417_03235 0.38 +1.1
739,038 - PS417_03235 0.38 +1.4
739,038 - PS417_03235 0.38 -3.0
739,039 + PS417_03235 0.38 -0.3
739,039 + PS417_03235 0.38 +1.9
739,039 + PS417_03235 0.38 -0.0
739,040 - PS417_03235 0.38 -0.3
739,040 - PS417_03235 0.38 +1.2
739,040 - PS417_03235 0.38 -0.4
739,109 + PS417_03235 0.43 +0.2
739,121 - PS417_03235 0.44 +0.3
739,332 + PS417_03235 0.59 +0.6
739,333 - PS417_03235 0.59 -3.1
739,695 - PS417_03235 0.85 -1.7
739,698 + PS417_03235 0.85 -0.2
739,698 + PS417_03235 0.85 -1.3
739,698 + PS417_03235 0.85 -0.8
739,733 - PS417_03235 0.88 +0.9
739,809 + +0.8
739,868 - -1.1
739,868 - -0.2
740,240 + PS417_03240 0.27 -2.8
740,240 + PS417_03240 0.27 +0.9
740,323 - PS417_03240 0.36 +0.6
740,333 + PS417_03240 0.37 +2.0
740,334 - PS417_03240 0.37 +0.6
740,440 + PS417_03240 0.49 -2.3
740,440 + PS417_03240 0.49 -0.3
740,440 + PS417_03240 0.49 -0.4
740,441 - PS417_03240 0.49 +1.4
740,659 + PS417_03240 0.72 -1.4
740,659 + PS417_03240 0.72 +0.5
740,659 + PS417_03240 0.72 +0.1
740,659 + PS417_03240 0.72 +0.6
740,737 + PS417_03240 0.81 -1.1

Or see this region's nucleotide sequence