Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03070 and PS417_03075 overlap by 4 nucleotides PS417_03075 and PS417_03080 are separated by 10 nucleotides PS417_03080 and PS417_03085 are separated by 10 nucleotides PS417_03085 and PS417_03090 are separated by 1 nucleotides
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314
_03080
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
PS417_03090: PS417_03090 - type II secretion system protein F, at 709,214 to 710,095
_03090
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070 at 706.978 kb on - strand, within PS417_03070 at 707.005 kb on - strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.137 kb on + strand, within PS417_03070 at 707.170 kb on - strand, within PS417_03070 at 707.215 kb on + strand, within PS417_03070 at 707.217 kb on + strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.323 kb on - strand at 707.323 kb on - strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.605 kb on + strand at 707.767 kb on + strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.446 kb on + strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.833 kb on + strand, within PS417_03085
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 706,718 + PS417_03070 0.23 -2.0 706,718 + PS417_03070 0.23 -0.4 706,718 + PS417_03070 0.23 -0.5 706,719 - PS417_03070 0.23 -1.2 706,861 - PS417_03070 0.41 +1.3 706,864 - PS417_03070 0.42 -2.7 706,978 - PS417_03070 0.56 +1.0 707,005 - PS417_03070 0.59 +0.2 707,102 + PS417_03070 0.72 +1.4 707,102 + PS417_03070 0.72 -0.7 707,137 + PS417_03070 0.76 -1.2 707,170 - PS417_03070 0.80 +1.4 707,215 + PS417_03070 0.86 +0.3 707,217 + PS417_03070 0.86 +1.4 707,218 - PS417_03070 0.86 +1.3 707,218 - PS417_03070 0.86 -0.3 707,218 - PS417_03070 0.86 +0.3 707,246 + +0.2 707,246 + -1.1 707,246 + -0.3 707,246 + -2.9 707,323 - -3.6 707,323 - -0.1 707,326 + +0.4 707,326 + -0.2 707,326 + -2.4 707,327 - +3.5 707,327 - +0.4 707,327 - +1.0 707,329 + -0.5 707,329 + +0.8 707,330 - -0.6 707,394 + PS417_03075 0.27 -0.4 707,394 + PS417_03075 0.27 -1.2 707,395 - PS417_03075 0.27 -0.1 707,395 - PS417_03075 0.27 -2.6 707,580 + -0.5 707,581 - -0.1 707,581 - -0.3 707,581 - -2.0 707,605 + -0.2 707,767 + PS417_03080 0.23 -1.2 708,038 - PS417_03080 0.61 -0.6 708,038 - PS417_03080 0.61 -1.4 708,446 + PS417_03085 0.14 -2.3 708,447 - PS417_03085 0.14 -0.2 708,447 - PS417_03085 0.14 -1.4 708,447 - PS417_03085 0.14 -2.2 708,447 - PS417_03085 0.14 -0.1 708,649 + PS417_03085 0.36 +1.2 708,649 + PS417_03085 0.36 -1.7 708,833 + PS417_03085 0.57 -0.6
Or see this region's nucleotide sequence