Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03005 and PS417_03010 are separated by 131 nucleotides PS417_03010 and PS417_03015 are separated by 178 nucleotides
PS417_03005: PS417_03005 - arginine decarboxylase, at 686,790 to 688,703
_03005
PS417_03010: PS417_03010 - XRE family transcriptional regulator, at 688,835 to 690,178
_03010
PS417_03015: PS417_03015 - hypothetical protein, at 690,357 to 695,255
_03015
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 688.008 kb on + strand, within PS417_03005 at 688.008 kb on + strand, within PS417_03005 at 688.009 kb on - strand, within PS417_03005 at 688.083 kb on + strand, within PS417_03005 at 688.083 kb on + strand, within PS417_03005 at 688.084 kb on - strand, within PS417_03005 at 688.110 kb on - strand, within PS417_03005 at 688.182 kb on + strand, within PS417_03005 at 688.182 kb on + strand, within PS417_03005 at 688.182 kb on + strand, within PS417_03005 at 688.183 kb on - strand, within PS417_03005 at 688.339 kb on - strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.401 kb on + strand, within PS417_03005 at 688.431 kb on + strand, within PS417_03005 at 688.451 kb on + strand, within PS417_03005 at 688.491 kb on + strand, within PS417_03005 at 688.574 kb on - strand at 688.702 kb on - strand at 688.702 kb on - strand at 688.829 kb on - strand at 688.840 kb on + strand at 688.840 kb on + strand at 688.841 kb on - strand at 688.843 kb on + strand at 688.843 kb on + strand at 688.844 kb on - strand at 688.847 kb on + strand at 688.868 kb on + strand at 689.059 kb on - strand, within PS417_03010 at 689.095 kb on - strand, within PS417_03010 at 689.095 kb on - strand, within PS417_03010 at 689.103 kb on + strand, within PS417_03010 at 689.104 kb on - strand, within PS417_03010 at 689.104 kb on - strand, within PS417_03010 at 689.152 kb on + strand, within PS417_03010 at 689.153 kb on - strand, within PS417_03010 at 689.330 kb on + strand, within PS417_03010 at 689.330 kb on + strand, within PS417_03010 at 689.330 kb on + strand, within PS417_03010 at 689.724 kb on + strand, within PS417_03010 at 689.725 kb on - strand, within PS417_03010 at 689.855 kb on + strand, within PS417_03010 at 689.995 kb on + strand, within PS417_03010 at 689.996 kb on - strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.998 kb on - strand, within PS417_03010 at 690.167 kb on + strand at 690.167 kb on + strand at 690.168 kb on - strand at 690.316 kb on + strand at 690.316 kb on + strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.318 kb on + strand at 690.318 kb on + strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.321 kb on - strand at 690.321 kb on - strand at 690.362 kb on + strand at 690.362 kb on + strand at 690.363 kb on - strand at 690.553 kb on + strand at 690.553 kb on + strand at 690.554 kb on - strand at 690.996 kb on + strand, within PS417_03015 at 690.996 kb on + strand, within PS417_03015 at 691.161 kb on + strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 688,008 + PS417_03005 0.64 -1.4 688,008 + PS417_03005 0.64 -2.0 688,009 - PS417_03005 0.64 +0.8 688,083 + PS417_03005 0.68 -2.1 688,083 + PS417_03005 0.68 -2.6 688,084 - PS417_03005 0.68 -1.4 688,110 - PS417_03005 0.69 +1.8 688,182 + PS417_03005 0.73 -0.7 688,182 + PS417_03005 0.73 -0.4 688,182 + PS417_03005 0.73 -2.9 688,183 - PS417_03005 0.73 -1.5 688,339 - PS417_03005 0.81 -1.2 688,401 + PS417_03005 0.84 -0.1 688,401 + PS417_03005 0.84 +0.1 688,401 + PS417_03005 0.84 -0.1 688,401 + PS417_03005 0.84 -1.4 688,431 + PS417_03005 0.86 -0.2 688,451 + PS417_03005 0.87 -1.0 688,491 + PS417_03005 0.89 -2.2 688,574 - +0.5 688,702 - -0.1 688,702 - +1.1 688,829 - +1.4 688,840 + -3.5 688,840 + -0.6 688,841 - +1.3 688,843 + +0.1 688,843 + +0.8 688,844 - -5.2 688,847 + +1.6 688,868 + +1.4 689,059 - PS417_03010 0.17 +0.4 689,095 - PS417_03010 0.19 -1.5 689,095 - PS417_03010 0.19 +0.5 689,103 + PS417_03010 0.20 -2.0 689,104 - PS417_03010 0.20 -0.0 689,104 - PS417_03010 0.20 +0.1 689,152 + PS417_03010 0.24 -1.0 689,153 - PS417_03010 0.24 +0.0 689,330 + PS417_03010 0.37 -1.6 689,330 + PS417_03010 0.37 -0.8 689,330 + PS417_03010 0.37 +0.8 689,724 + PS417_03010 0.66 +1.8 689,725 - PS417_03010 0.66 -0.6 689,855 + PS417_03010 0.76 -1.6 689,995 + PS417_03010 0.86 -1.4 689,996 - PS417_03010 0.86 +1.1 689,997 + PS417_03010 0.86 -1.7 689,997 + PS417_03010 0.86 +0.9 689,997 + PS417_03010 0.86 +0.0 689,998 - PS417_03010 0.87 -0.2 690,167 + +0.3 690,167 + +1.8 690,168 - +2.1 690,316 + -0.2 690,316 + +0.7 690,317 - -1.2 690,317 - +4.5 690,317 - -1.5 690,317 - +0.0 690,317 - -1.7 690,317 - -1.3 690,318 + -0.9 690,318 + +0.6 690,319 - +2.0 690,319 - -1.4 690,319 - +0.5 690,319 - -0.1 690,320 + -0.9 690,320 + +1.0 690,320 + -0.5 690,320 + +0.6 690,320 + -1.5 690,320 + +1.8 690,321 - +0.1 690,321 - +0.6 690,362 + +1.4 690,362 + -0.2 690,363 - -2.4 690,553 + +0.8 690,553 + +0.7 690,554 - +0.5 690,996 + PS417_03015 0.13 +1.4 690,996 + PS417_03015 0.13 +0.2 691,161 + PS417_03015 0.16 +0.9 691,162 - PS417_03015 0.16 -1.2 691,162 - PS417_03015 0.16 +1.1
Or see this region's nucleotide sequence