Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00295 and PS417_00300 are separated by 367 nucleotides PS417_00300 and PS417_00305 are separated by 58 nucleotides
PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738
_00295
PS417_00300: PS417_00300 - cytochrome B559 subunit alpha, at 59,106 to 60,233
_00300
PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878
_00305
Position (kb) 59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 58.256 kb on + strand, within PS417_00295 at 58.364 kb on - strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.365 kb on + strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.366 kb on - strand, within PS417_00295 at 58.404 kb on + strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.405 kb on - strand, within PS417_00295 at 58.573 kb on - strand, within PS417_00295 at 58.761 kb on + strand at 58.762 kb on - strand at 58.783 kb on + strand at 58.784 kb on - strand at 58.784 kb on - strand at 58.792 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.875 kb on + strand at 58.962 kb on + strand at 58.985 kb on - strand at 59.030 kb on + strand at 59.031 kb on - strand at 59.038 kb on - strand at 59.187 kb on - strand at 59.439 kb on + strand, within PS417_00300 at 59.439 kb on + strand, within PS417_00300 at 59.440 kb on - strand, within PS417_00300 at 59.499 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.505 kb on + strand, within PS417_00300 at 59.589 kb on + strand, within PS417_00300 at 59.589 kb on + strand, within PS417_00300 at 59.590 kb on - strand, within PS417_00300 at 59.590 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.764 kb on - strand, within PS417_00300 at 59.904 kb on - strand, within PS417_00300 at 59.949 kb on + strand, within PS417_00300 at 59.949 kb on + strand, within PS417_00300 at 59.950 kb on - strand, within PS417_00300 at 60.147 kb on + strand at 60.147 kb on + strand at 60.194 kb on + strand at 60.236 kb on + strand at 60.237 kb on - strand at 60.400 kb on + strand at 60.730 kb on + strand, within PS417_00305 at 60.731 kb on - strand, within PS417_00305 at 60.731 kb on - strand, within PS417_00305 at 60.751 kb on + strand, within PS417_00305 at 60.751 kb on + strand, within PS417_00305 at 60.752 kb on - strand, within PS417_00305 at 60.752 kb on - strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.069 kb on + strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305 at 61.070 kb on - strand, within PS417_00305
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 58,256 + PS417_00295 0.25 -3.9 58,364 - PS417_00295 0.42 +1.0 58,365 + PS417_00295 0.42 -2.9 58,365 + PS417_00295 0.42 -4.0 58,366 - PS417_00295 0.42 -0.5 58,366 - PS417_00295 0.42 -0.0 58,404 + PS417_00295 0.48 -0.4 58,405 - PS417_00295 0.48 +0.3 58,405 - PS417_00295 0.48 +0.4 58,573 - PS417_00295 0.74 +2.6 58,761 + -0.2 58,762 - -2.1 58,783 + +1.3 58,784 - +0.2 58,784 - -1.1 58,792 + +0.2 58,794 + +2.2 58,794 + -1.8 58,794 + -0.1 58,794 + +1.7 58,875 + +0.5 58,962 + -0.1 58,985 - -0.2 59,030 + +0.3 59,031 - -1.3 59,038 - +0.5 59,187 - -2.6 59,439 + PS417_00300 0.30 -2.1 59,439 + PS417_00300 0.30 +2.5 59,440 - PS417_00300 0.30 +0.4 59,499 + PS417_00300 0.35 -2.4 59,505 + PS417_00300 0.35 +0.8 59,505 + PS417_00300 0.35 -2.0 59,505 + PS417_00300 0.35 -3.3 59,589 + PS417_00300 0.43 -2.2 59,589 + PS417_00300 0.43 +1.0 59,590 - PS417_00300 0.43 -0.6 59,590 - PS417_00300 0.43 -3.5 59,764 - PS417_00300 0.58 -0.1 59,764 - PS417_00300 0.58 +0.1 59,764 - PS417_00300 0.58 -0.9 59,764 - PS417_00300 0.58 -0.4 59,904 - PS417_00300 0.71 +1.4 59,949 + PS417_00300 0.75 +0.4 59,949 + PS417_00300 0.75 -0.1 59,950 - PS417_00300 0.75 -1.2 60,147 + -0.8 60,147 + -0.2 60,194 + +0.3 60,236 + +1.7 60,237 - -1.0 60,400 + -0.5 60,730 + PS417_00305 0.28 -0.8 60,731 - PS417_00305 0.28 -0.3 60,731 - PS417_00305 0.28 +0.6 60,751 + PS417_00305 0.29 +1.2 60,751 + PS417_00305 0.29 -0.1 60,752 - PS417_00305 0.29 -0.6 60,752 - PS417_00305 0.29 +0.0 61,069 + PS417_00305 0.49 -1.2 61,069 + PS417_00305 0.49 +0.2 61,069 + PS417_00305 0.49 +0.1 61,070 - PS417_00305 0.49 -0.2 61,070 - PS417_00305 0.49 +0.0 61,070 - PS417_00305 0.49 +0.0
Or see this region's nucleotide sequence