Strain Fitness in Pseudomonas simiae WCS417 around PS417_27925
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 6,022,765 | + | PS417_27920 | 0.79 | +1.5 | |
| 6,022,766 | - | PS417_27920 | 0.79 | +1.4 | |
| 6,022,766 | - | PS417_27920 | 0.79 | -0.3 | |
| 6,023,134 | + | PS417_27920 | 0.89 | +0.8 | |
| 6,023,135 | - | PS417_27920 | 0.89 | +0.5 | |
| 6,023,135 | - | PS417_27920 | 0.89 | +1.3 | |
| 6,023,247 | - | -0.8 | |||
| 6,023,799 | + | PS417_27925 | 0.23 | +0.0 | |
| 6,023,906 | - | PS417_27925 | 0.31 | -1.8 | |
| 6,024,295 | - | PS417_27925 | 0.62 | -1.4 | |
| 6,024,295 | - | PS417_27925 | 0.62 | +0.2 | |
| 6,024,313 | - | PS417_27925 | 0.63 | +0.1 | |
| 6,024,919 | - | -2.0 | |||
| 6,024,919 | - | +0.1 | |||
| 6,025,152 | + | PS417_27930 | 0.27 | +1.4 | |
| 6,025,575 | + | PS417_27930 | 0.58 | -2.6 | |
| 6,025,575 | + | PS417_27930 | 0.58 | -0.5 | |
| 6,025,576 | - | PS417_27930 | 0.58 | +0.0 | |
| 6,025,576 | - | PS417_27930 | 0.58 | -1.8 | |
| 6,025,590 | - | PS417_27930 | 0.59 | +1.6 | |
| 6,025,761 | + | PS417_27930 | 0.72 | -0.6 |
Or see this region's nucleotide sequence