Strain Fitness in Pseudomonas simiae WCS417 around PS417_27900

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27895 and PS417_27900 overlap by 1 nucleotidesPS417_27900 and PS417_27905 overlap by 1 nucleotides PS417_27895: PS417_27895 - membrane protein, at 6,013,795 to 6,014,979 _27895 PS417_27900: PS417_27900 - ABC transporter ATP-binding protein, at 6,014,979 to 6,015,683 _27900 PS417_27905: PS417_27905 - serine/threonine protein kinase, at 6,015,683 to 6,018,637 _27905 Position (kb) 6014 6015 6016Strain fitness (log2 ratio) -2 -1 0 1 2at 6013.983 kb on - strand, within PS417_27895at 6014.246 kb on - strand, within PS417_27895at 6014.248 kb on + strand, within PS417_27895at 6014.249 kb on - strandat 6014.267 kb on + strand, within PS417_27895at 6014.306 kb on + strand, within PS417_27895at 6014.306 kb on + strand, within PS417_27895at 6014.306 kb on + strand, within PS417_27895at 6014.307 kb on - strand, within PS417_27895at 6014.307 kb on - strand, within PS417_27895at 6014.866 kb on + strandat 6014.939 kb on + strandat 6015.412 kb on + strand, within PS417_27900at 6015.412 kb on + strand, within PS417_27900at 6015.629 kb on + strandat 6015.632 kb on - strandat 6015.684 kb on + strandat 6015.781 kb on - strandat 6015.967 kb on + strandat 6015.968 kb on - strandat 6016.377 kb on + strand, within PS417_27905at 6016.482 kb on + strand, within PS417_27905at 6016.482 kb on + strand, within PS417_27905at 6016.483 kb on - strand, within PS417_27905

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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6,013,983 - PS417_27895 0.16 -1.1
6,014,246 - PS417_27895 0.38 -1.1
6,014,248 + PS417_27895 0.38 -1.1
6,014,249 - +0.5
6,014,267 + PS417_27895 0.40 +1.2
6,014,306 + PS417_27895 0.43 +0.9
6,014,306 + PS417_27895 0.43 +0.9
6,014,306 + PS417_27895 0.43 -1.3
6,014,307 - PS417_27895 0.43 +1.0
6,014,307 - PS417_27895 0.43 -0.4
6,014,866 + +1.1
6,014,939 + +2.7
6,015,412 + PS417_27900 0.61 +2.4
6,015,412 + PS417_27900 0.61 +0.2
6,015,629 + +1.3
6,015,632 - -2.7
6,015,684 + +0.4
6,015,781 - +0.5
6,015,967 + -2.1
6,015,968 - -0.1
6,016,377 + PS417_27905 0.23 -1.6
6,016,482 + PS417_27905 0.27 +0.5
6,016,482 + PS417_27905 0.27 -0.6
6,016,483 - PS417_27905 0.27 -0.1

Or see this region's nucleotide sequence