Strain Fitness in Pseudomonas simiae WCS417 around PS417_27900
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 6,013,983 | - | PS417_27895 | 0.16 | -1.1 | |
| 6,014,246 | - | PS417_27895 | 0.38 | -1.1 | |
| 6,014,248 | + | PS417_27895 | 0.38 | -1.1 | |
| 6,014,249 | - | +0.5 | |||
| 6,014,267 | + | PS417_27895 | 0.40 | +1.2 | |
| 6,014,306 | + | PS417_27895 | 0.43 | +0.9 | |
| 6,014,306 | + | PS417_27895 | 0.43 | +0.9 | |
| 6,014,306 | + | PS417_27895 | 0.43 | -1.3 | |
| 6,014,307 | - | PS417_27895 | 0.43 | +1.0 | |
| 6,014,307 | - | PS417_27895 | 0.43 | -0.4 | |
| 6,014,866 | + | +1.1 | |||
| 6,014,939 | + | +2.7 | |||
| 6,015,412 | + | PS417_27900 | 0.61 | +2.4 | |
| 6,015,412 | + | PS417_27900 | 0.61 | +0.2 | |
| 6,015,629 | + | +1.3 | |||
| 6,015,632 | - | -2.7 | |||
| 6,015,684 | + | +0.4 | |||
| 6,015,781 | - | +0.5 | |||
| 6,015,967 | + | -2.1 | |||
| 6,015,968 | - | -0.1 | |||
| 6,016,377 | + | PS417_27905 | 0.23 | -1.6 | |
| 6,016,482 | + | PS417_27905 | 0.27 | +0.5 | |
| 6,016,482 | + | PS417_27905 | 0.27 | -0.6 | |
| 6,016,483 | - | PS417_27905 | 0.27 | -0.1 |
Or see this region's nucleotide sequence