Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27875 and PS417_27880 are separated by 117 nucleotides PS417_27880 and PS417_27885 are separated by 124 nucleotides
PS417_27875: PS417_27875 - histidine kinase, at 6,009,071 to 6,010,471
_27875
PS417_27880: PS417_27880 - helicase, at 6,010,589 to 6,010,963
_27880
PS417_27885: PS417_27885 - hypothetical protein, at 6,011,088 to 6,012,008
_27885
Position (kb)
6010
6011 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6009.791 kb on + strand, within PS417_27875 at 6009.791 kb on + strand, within PS417_27875 at 6010.025 kb on + strand, within PS417_27875 at 6010.025 kb on + strand, within PS417_27875 at 6010.026 kb on - strand, within PS417_27875 at 6010.221 kb on + strand, within PS417_27875 at 6010.256 kb on + strand, within PS417_27875 at 6010.256 kb on + strand, within PS417_27875 at 6010.256 kb on + strand at 6010.257 kb on - strand, within PS417_27875 at 6010.257 kb on - strand, within PS417_27875 at 6010.257 kb on - strand, within PS417_27875 at 6010.257 kb on - strand, within PS417_27875 at 6010.412 kb on - strand at 6010.581 kb on + strand at 6010.582 kb on - strand at 6010.586 kb on + strand at 6010.587 kb on - strand at 6010.587 kb on - strand at 6010.590 kb on + strand at 6010.590 kb on + strand at 6010.591 kb on - strand at 6010.614 kb on + strand at 6010.984 kb on + strand at 6011.074 kb on + strand at 6011.074 kb on + strand at 6011.341 kb on - strand, within PS417_27885 at 6011.383 kb on + strand, within PS417_27885 at 6011.395 kb on + strand at 6011.395 kb on + strand, within PS417_27885 at 6011.395 kb on + strand, within PS417_27885 at 6011.630 kb on - strand, within PS417_27885 at 6011.680 kb on + strand, within PS417_27885 at 6011.681 kb on - strand, within PS417_27885 at 6011.878 kb on + strand, within PS417_27885 at 6011.881 kb on + strand, within PS417_27885 at 6011.882 kb on - strand, within PS417_27885
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 6,009,791 + PS417_27875 0.51 -0.6 6,009,791 + PS417_27875 0.51 +1.7 6,010,025 + PS417_27875 0.68 +2.2 6,010,025 + PS417_27875 0.68 +1.4 6,010,026 - PS417_27875 0.68 +2.0 6,010,221 + PS417_27875 0.82 +1.6 6,010,256 + PS417_27875 0.85 +1.2 6,010,256 + PS417_27875 0.85 +1.7 6,010,256 + +1.5 6,010,257 - PS417_27875 0.85 +1.7 6,010,257 - PS417_27875 0.85 +2.9 6,010,257 - PS417_27875 0.85 +2.4 6,010,257 - PS417_27875 0.85 +0.9 6,010,412 - +1.0 6,010,581 + -1.4 6,010,582 - -3.7 6,010,586 + -0.5 6,010,587 - +0.3 6,010,587 - -3.0 6,010,590 + -1.2 6,010,590 + +0.7 6,010,591 - +0.8 6,010,614 + -0.8 6,010,984 + -0.2 6,011,074 + -1.6 6,011,074 + -0.8 6,011,341 - PS417_27885 0.27 +1.5 6,011,383 + PS417_27885 0.32 -0.1 6,011,395 + +1.5 6,011,395 + PS417_27885 0.33 +1.2 6,011,395 + PS417_27885 0.33 -0.8 6,011,630 - PS417_27885 0.59 +0.0 6,011,680 + PS417_27885 0.64 +1.8 6,011,681 - PS417_27885 0.64 +0.8 6,011,878 + PS417_27885 0.86 -1.0 6,011,881 + PS417_27885 0.86 +2.2 6,011,882 - PS417_27885 0.86 +0.0
Or see this region's nucleotide sequence