Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27645 and PS417_27650 are separated by 3 nucleotides PS417_27650 and PS417_27655 are separated by 177 nucleotides
PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570
_27645
PS417_27650: PS417_27650 - chemotaxis protein, at 5,961,574 to 5,963,550
_27650
PS417_27655: PS417_27655 - LysR family transcriptional regulator, at 5,963,728 to 5,964,648
_27655
Position (kb) 5961
5962
5963
5964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5960.635 kb on + strand at 5960.635 kb on + strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.749 kb on + strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.957 kb on - strand, within PS417_27645 at 5961.301 kb on + strand, within PS417_27645 at 5961.355 kb on + strand, within PS417_27645 at 5961.445 kb on + strand, within PS417_27645 at 5961.445 kb on + strand, within PS417_27645 at 5961.446 kb on - strand, within PS417_27645 at 5961.446 kb on - strand, within PS417_27645 at 5961.460 kb on + strand, within PS417_27645 at 5961.460 kb on + strand, within PS417_27645 at 5961.461 kb on - strand, within PS417_27645 at 5961.569 kb on - strand at 5961.847 kb on + strand, within PS417_27650 at 5961.847 kb on + strand, within PS417_27650 at 5961.848 kb on - strand, within PS417_27650 at 5961.848 kb on - strand, within PS417_27650 at 5961.848 kb on - strand, within PS417_27650 at 5962.299 kb on + strand, within PS417_27650 at 5962.299 kb on + strand, within PS417_27650 at 5962.300 kb on - strand, within PS417_27650 at 5962.300 kb on - strand, within PS417_27650 at 5962.334 kb on + strand at 5962.334 kb on + strand, within PS417_27650 at 5962.334 kb on + strand, within PS417_27650 at 5962.334 kb on + strand, within PS417_27650 at 5962.334 kb on + strand, within PS417_27650 at 5962.335 kb on - strand, within PS417_27650 at 5962.493 kb on - strand, within PS417_27650 at 5962.989 kb on - strand at 5963.001 kb on - strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.034 kb on - strand, within PS417_27650 at 5963.244 kb on - strand, within PS417_27650 at 5963.469 kb on + strand at 5963.515 kb on + strand at 5963.516 kb on - strand at 5963.840 kb on + strand, within PS417_27655 at 5963.840 kb on + strand, within PS417_27655 at 5963.843 kb on + strand, within PS417_27655 at 5963.844 kb on - strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.168 kb on - strand, within PS417_27655 at 5964.201 kb on - strand, within PS417_27655 at 5964.393 kb on + strand, within PS417_27655
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,960,635 + +0.6 5,960,635 + +0.1 5,960,636 - -0.7 5,960,636 - +0.3 5,960,636 - -2.6 5,960,636 - +0.2 5,960,749 + PS417_27645 0.10 +1.2 5,960,879 - PS417_27645 0.24 -1.8 5,960,879 - PS417_27645 0.24 -0.4 5,960,957 - PS417_27645 0.33 -0.5 5,961,301 + PS417_27645 0.70 +3.2 5,961,355 + PS417_27645 0.76 +1.5 5,961,445 + PS417_27645 0.86 -0.2 5,961,445 + PS417_27645 0.86 -0.0 5,961,446 - PS417_27645 0.86 +0.3 5,961,446 - PS417_27645 0.86 -1.1 5,961,460 + PS417_27645 0.88 +1.6 5,961,460 + PS417_27645 0.88 +0.7 5,961,461 - PS417_27645 0.88 -0.5 5,961,569 - +1.1 5,961,847 + PS417_27650 0.14 -4.0 5,961,847 + PS417_27650 0.14 -0.8 5,961,848 - PS417_27650 0.14 -2.9 5,961,848 - PS417_27650 0.14 -3.0 5,961,848 - PS417_27650 0.14 +0.4 5,962,299 + PS417_27650 0.37 +0.0 5,962,299 + PS417_27650 0.37 +0.0 5,962,300 - PS417_27650 0.37 -0.2 5,962,300 - PS417_27650 0.37 -0.2 5,962,334 + -1.1 5,962,334 + PS417_27650 0.38 -3.2 5,962,334 + PS417_27650 0.38 -1.9 5,962,334 + PS417_27650 0.38 +1.3 5,962,334 + PS417_27650 0.38 -0.6 5,962,335 - PS417_27650 0.38 +0.7 5,962,493 - PS417_27650 0.46 +0.5 5,962,989 - +0.5 5,963,001 - PS417_27650 0.72 +0.6 5,963,033 + PS417_27650 0.74 -3.8 5,963,033 + PS417_27650 0.74 -0.8 5,963,033 + PS417_27650 0.74 +1.5 5,963,033 + PS417_27650 0.74 -0.2 5,963,033 + PS417_27650 0.74 -1.3 5,963,033 + PS417_27650 0.74 -1.1 5,963,034 - PS417_27650 0.74 +0.2 5,963,244 - PS417_27650 0.84 -1.6 5,963,469 + -0.3 5,963,515 + -1.0 5,963,516 - +0.3 5,963,840 + PS417_27655 0.12 -1.5 5,963,840 + PS417_27655 0.12 -0.9 5,963,843 + PS417_27655 0.12 -0.4 5,963,844 - PS417_27655 0.13 +1.3 5,964,163 + PS417_27655 0.47 +0.2 5,964,163 + +1.5 5,964,163 + PS417_27655 0.47 +0.5 5,964,163 + PS417_27655 0.47 -0.6 5,964,167 + PS417_27655 0.48 +0.9 5,964,167 + PS417_27655 0.48 +1.2 5,964,168 - PS417_27655 0.48 +1.3 5,964,201 - PS417_27655 0.51 +2.1 5,964,393 + PS417_27655 0.72 +0.6
Or see this region's nucleotide sequence