Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27630 and PS417_27635 are separated by 94 nucleotides PS417_27635 and PS417_27640 overlap by 4 nucleotides PS417_27640 and PS417_27645 are separated by 111 nucleotides
PS417_27630: PS417_27630 - MFS transporter, at 5,957,101 to 5,958,372
_27630
PS417_27635: PS417_27635 - magnesium chelatase, at 5,958,467 to 5,959,963
_27635
PS417_27640: PS417_27640 - TetR family transcriptional regulator, at 5,959,960 to 5,960,544
_27640
PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570
_27645
Position (kb) 5958
5959
5960 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5957.743 kb on + strand, within PS417_27630 at 5957.744 kb on - strand, within PS417_27630 at 5957.744 kb on - strand, within PS417_27630 at 5957.764 kb on + strand, within PS417_27630 at 5957.764 kb on + strand, within PS417_27630 at 5957.833 kb on + strand, within PS417_27630 at 5957.833 kb on + strand, within PS417_27630 at 5957.848 kb on - strand, within PS417_27630 at 5957.866 kb on + strand, within PS417_27630 at 5957.866 kb on + strand, within PS417_27630 at 5957.867 kb on - strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.997 kb on + strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5957.998 kb on - strand, within PS417_27630 at 5958.338 kb on - strand at 5958.349 kb on + strand at 5958.349 kb on + strand at 5958.349 kb on + strand at 5958.373 kb on + strand at 5958.373 kb on + strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.374 kb on - strand at 5958.382 kb on + strand at 5958.419 kb on - strand at 5958.419 kb on - strand at 5959.013 kb on + strand, within PS417_27635 at 5959.014 kb on - strand, within PS417_27635 at 5959.048 kb on - strand, within PS417_27635 at 5959.395 kb on + strand, within PS417_27635 at 5959.396 kb on - strand, within PS417_27635 at 5960.418 kb on - strand, within PS417_27640 at 5960.570 kb on + strand at 5960.635 kb on + strand at 5960.635 kb on + strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.749 kb on + strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.957 kb on - strand, within PS417_27645
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,957,743 + PS417_27630 0.50 +1.2 5,957,744 - PS417_27630 0.51 -1.5 5,957,744 - PS417_27630 0.51 -0.7 5,957,764 + PS417_27630 0.52 +1.0 5,957,764 + PS417_27630 0.52 -2.2 5,957,833 + PS417_27630 0.58 -4.9 5,957,833 + PS417_27630 0.58 +0.7 5,957,848 - PS417_27630 0.59 +2.5 5,957,866 + PS417_27630 0.60 +0.6 5,957,866 + PS417_27630 0.60 +0.3 5,957,867 - PS417_27630 0.60 -0.9 5,957,997 + PS417_27630 0.70 -3.3 5,957,997 + PS417_27630 0.70 +1.5 5,957,997 + PS417_27630 0.70 -0.6 5,957,997 + PS417_27630 0.70 +0.0 5,957,998 - PS417_27630 0.71 +0.2 5,957,998 - PS417_27630 0.71 -0.3 5,957,998 - PS417_27630 0.71 -0.8 5,957,998 - PS417_27630 0.71 +0.8 5,958,338 - -1.7 5,958,349 + +0.8 5,958,349 + -3.9 5,958,349 + +2.3 5,958,373 + +0.6 5,958,373 + +0.9 5,958,374 - +0.2 5,958,374 - +0.2 5,958,374 - -0.9 5,958,374 - -0.1 5,958,374 - -0.6 5,958,374 - +0.3 5,958,374 - -2.9 5,958,382 + -1.3 5,958,419 - -1.3 5,958,419 - +0.8 5,959,013 + PS417_27635 0.36 +2.1 5,959,014 - PS417_27635 0.37 -1.3 5,959,048 - PS417_27635 0.39 +1.1 5,959,395 + PS417_27635 0.62 +0.2 5,959,396 - PS417_27635 0.62 +0.1 5,960,418 - PS417_27640 0.78 +0.1 5,960,570 + -0.1 5,960,635 + +0.6 5,960,635 + +0.1 5,960,636 - -0.7 5,960,636 - +0.3 5,960,636 - -2.6 5,960,636 - +0.2 5,960,749 + PS417_27645 0.10 +1.2 5,960,879 - PS417_27645 0.24 -1.8 5,960,879 - PS417_27645 0.24 -0.4 5,960,957 - PS417_27645 0.33 -0.5
Or see this region's nucleotide sequence