Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02720 and PS417_02725 are separated by 150 nucleotides PS417_02725 and PS417_02730 are separated by 359 nucleotides PS417_02730 and PS417_02735 are separated by 201 nucleotides PS417_02735 and PS417_02740 are separated by 98 nucleotides
PS417_02720: PS417_02720 - TetR family transcriptional regulator, at 620,136 to 620,768
_02720
PS417_02725: PS417_02725 - hypothetical protein, at 620,919 to 621,371
_02725
PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800
_02730
PS417_02735: PS417_02735 - bacterioferritin, at 624,002 to 624,532
_02735
PS417_02740: PS417_02740 - LysR family transcriptional regulator, at 624,631 to 625,530
_02740
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 620.809 kb on - strand at 620.921 kb on - strand at 620.921 kb on - strand at 621.154 kb on + strand, within PS417_02725 at 621.209 kb on - strand, within PS417_02725 at 621.336 kb on - strand at 621.340 kb on - strand at 621.357 kb on + strand at 621.440 kb on - strand at 621.465 kb on - strand at 621.563 kb on - strand at 621.675 kb on + strand at 621.676 kb on - strand at 621.676 kb on - strand at 621.677 kb on + strand at 621.678 kb on - strand at 621.678 kb on - strand at 622.406 kb on + strand, within PS417_02730 at 622.760 kb on + strand, within PS417_02730 at 623.018 kb on + strand, within PS417_02730 at 623.019 kb on - strand, within PS417_02730 at 623.019 kb on - strand, within PS417_02730 at 623.489 kb on + strand, within PS417_02730 at 623.489 kb on + strand, within PS417_02730 at 623.489 kb on + strand, within PS417_02730 at 623.490 kb on - strand, within PS417_02730 at 623.490 kb on - strand, within PS417_02730 at 623.490 kb on - strand, within PS417_02730 at 623.588 kb on + strand, within PS417_02730 at 623.588 kb on + strand, within PS417_02730 at 623.830 kb on + strand at 623.883 kb on + strand at 623.884 kb on - strand at 623.896 kb on - strand at 623.902 kb on + strand at 623.902 kb on + strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.933 kb on - strand at 623.949 kb on + strand at 623.950 kb on - strand at 624.003 kb on + strand at 624.020 kb on - strand at 624.094 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.163 kb on - strand, within PS417_02735 at 624.196 kb on - strand, within PS417_02735 at 624.263 kb on - strand, within PS417_02735 at 624.360 kb on + strand, within PS417_02735 at 624.380 kb on + strand, within PS417_02735 at 624.381 kb on - strand, within PS417_02735 at 624.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 620,809 - +0.7 620,921 - -1.0 620,921 - -1.1 621,154 + PS417_02725 0.52 -0.6 621,209 - PS417_02725 0.64 -0.4 621,336 - +0.7 621,340 - -0.9 621,357 + -0.5 621,440 - -3.6 621,465 - -2.0 621,563 - +1.6 621,675 + +1.9 621,676 - +1.0 621,676 - +0.1 621,677 + -2.9 621,678 - -0.9 621,678 - +0.1 622,406 + PS417_02730 0.33 -1.7 622,760 + PS417_02730 0.50 -2.6 623,018 + PS417_02730 0.62 -0.2 623,019 - PS417_02730 0.62 -0.2 623,019 - PS417_02730 0.62 -2.4 623,489 + PS417_02730 0.85 +0.4 623,489 + PS417_02730 0.85 +0.4 623,489 + PS417_02730 0.85 -0.6 623,490 - PS417_02730 0.85 -0.6 623,490 - PS417_02730 0.85 +0.6 623,490 - PS417_02730 0.85 -0.9 623,588 + PS417_02730 0.90 -0.7 623,588 + PS417_02730 0.90 -0.3 623,830 + +1.7 623,883 + +0.4 623,884 - +1.0 623,896 - -1.7 623,902 + -2.0 623,902 + -2.3 623,903 - +1.1 623,903 - +0.8 623,903 - +0.3 623,933 - -0.2 623,949 + -1.1 623,950 - -1.6 624,003 + +1.6 624,020 - +1.4 624,094 + PS417_02735 0.17 -0.7 624,105 + PS417_02735 0.19 +1.8 624,105 + PS417_02735 0.19 -1.4 624,105 + PS417_02735 0.19 -0.9 624,106 - PS417_02735 0.20 -0.6 624,106 - PS417_02735 0.20 -1.2 624,106 - PS417_02735 0.20 -0.1 624,163 - PS417_02735 0.30 -0.1 624,196 - PS417_02735 0.37 +0.4 624,263 - PS417_02735 0.49 -0.1 624,360 + PS417_02735 0.67 +0.9 624,380 + PS417_02735 0.71 -0.1 624,381 - PS417_02735 0.71 +0.4 624,546 + +1.3
Or see this region's nucleotide sequence