Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27370 and PS417_27375 are separated by 235 nucleotides PS417_27375 and PS417_27380 are separated by 121 nucleotides PS417_27380 and PS417_27385 are separated by 255 nucleotides
PS417_27370: PS417_27370 - transcription termination factor Rho, at 5,906,114 to 5,907,373
_27370
PS417_27375: PS417_27375 - thioredoxin, at 5,907,609 to 5,907,938
_27375
PS417_27380: PS417_27380 - GntR family transcriptional regulator, at 5,908,060 to 5,908,755
_27380
PS417_27385: PS417_27385 - amino acid ABC transporter substrate-binding protein, at 5,909,011 to 5,909,796
_27385
Position (kb)
5908
5909 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5907.376 kb on - strand at 5907.387 kb on - strand at 5907.387 kb on - strand at 5907.387 kb on - strand at 5907.395 kb on - strand at 5907.424 kb on - strand at 5907.533 kb on - strand at 5907.610 kb on + strand at 5907.956 kb on - strand at 5908.052 kb on - strand at 5908.389 kb on + strand, within PS417_27380 at 5908.515 kb on + strand, within PS417_27380 at 5908.795 kb on - strand at 5908.917 kb on - strand at 5909.023 kb on + strand at 5909.545 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.585 kb on + strand, within PS417_27385 at 5909.586 kb on - strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.662 kb on + strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385 at 5909.663 kb on - strand, within PS417_27385
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,907,376 - -1.4 5,907,387 - -1.1 5,907,387 - -0.8 5,907,387 - -2.8 5,907,395 - -0.0 5,907,424 - +0.8 5,907,533 - -0.5 5,907,610 + -2.5 5,907,956 - +0.5 5,908,052 - +0.6 5,908,389 + PS417_27380 0.47 -0.1 5,908,515 + PS417_27380 0.65 -1.4 5,908,795 - -2.3 5,908,917 - -1.7 5,909,023 + +0.6 5,909,545 + PS417_27385 0.68 +2.8 5,909,585 + PS417_27385 0.73 -1.0 5,909,585 + PS417_27385 0.73 -0.1 5,909,585 + PS417_27385 0.73 -1.5 5,909,586 - PS417_27385 0.73 -0.3 5,909,662 + PS417_27385 0.83 +0.3 5,909,662 + PS417_27385 0.83 +2.5 5,909,662 + PS417_27385 0.83 -0.3 5,909,663 - PS417_27385 0.83 -3.2 5,909,663 - PS417_27385 0.83 +0.5 5,909,663 - PS417_27385 0.83 +0.1
Or see this region's nucleotide sequence