Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27270 and PS417_27275 are separated by 3 nucleotides PS417_27275 and PS417_27280 overlap by 8 nucleotides PS417_27280 and PS417_27285 overlap by 4 nucleotides
PS417_27270: PS417_27270 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,886,714 to 5,887,937
_27270
PS417_27275: PS417_27275 - hypothetical protein, at 5,887,941 to 5,888,426
_27275
PS417_27280: PS417_27280 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 5,888,419 to 5,889,606
_27280
PS417_27285: PS417_27285 - Xaa-Pro aminopeptidase, at 5,889,603 to 5,890,925
_27285
Position (kb) 5888
5889
5890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5887.943 kb on - strand at 5887.976 kb on - strand at 5888.048 kb on - strand, within PS417_27275 at 5888.048 kb on - strand, within PS417_27275 at 5888.116 kb on + strand, within PS417_27275 at 5888.117 kb on - strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.177 kb on - strand, within PS417_27275 at 5888.212 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.264 kb on - strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.353 kb on + strand, within PS417_27275 at 5888.354 kb on - strand, within PS417_27275 at 5888.420 kb on + strand at 5888.421 kb on - strand at 5888.421 kb on - strand at 5888.421 kb on - strand at 5889.761 kb on + strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.763 kb on + strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.830 kb on - strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.893 kb on + strand, within PS417_27285 at 5889.893 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.896 kb on - strand, within PS417_27285 at 5889.896 kb on - strand, within PS417_27285 at 5890.047 kb on + strand, within PS417_27285 at 5890.048 kb on - strand, within PS417_27285 at 5890.050 kb on + strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand at 5890.123 kb on + strand, within PS417_27285 at 5890.401 kb on - strand, within PS417_27285 at 5890.401 kb on - strand, within PS417_27285 at 5890.544 kb on - strand, within PS417_27285 at 5890.544 kb on - strand, within PS417_27285
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,887,943 - +4.0 5,887,976 - +0.5 5,888,048 - PS417_27275 0.22 -1.5 5,888,048 - PS417_27275 0.22 -0.8 5,888,116 + PS417_27275 0.36 +0.5 5,888,117 - PS417_27275 0.36 -0.6 5,888,176 + PS417_27275 0.48 -3.4 5,888,176 + PS417_27275 0.48 +1.6 5,888,177 - PS417_27275 0.49 +0.3 5,888,212 + PS417_27275 0.56 +1.5 5,888,263 + PS417_27275 0.66 +1.0 5,888,263 + PS417_27275 0.66 -3.2 5,888,263 + PS417_27275 0.66 -2.1 5,888,263 + PS417_27275 0.66 +0.2 5,888,264 - PS417_27275 0.66 +0.9 5,888,275 + PS417_27275 0.69 -1.7 5,888,275 + PS417_27275 0.69 -0.5 5,888,353 + PS417_27275 0.85 +0.5 5,888,354 - PS417_27275 0.85 -0.3 5,888,420 + +0.5 5,888,421 - +1.1 5,888,421 - +1.2 5,888,421 - +0.5 5,889,761 + PS417_27285 0.12 -2.0 5,889,762 - PS417_27285 0.12 +0.7 5,889,762 - PS417_27285 0.12 -0.6 5,889,762 - PS417_27285 0.12 -1.0 5,889,763 + PS417_27285 0.12 -3.0 5,889,764 - PS417_27285 0.12 -2.1 5,889,764 - PS417_27285 0.12 -2.4 5,889,764 - PS417_27285 0.12 +1.3 5,889,830 - PS417_27285 0.17 -2.4 5,889,883 + PS417_27285 0.21 +0.8 5,889,883 + PS417_27285 0.21 +0.3 5,889,883 + PS417_27285 0.21 -1.5 5,889,883 + PS417_27285 0.21 -1.3 5,889,883 + PS417_27285 0.21 +2.0 5,889,884 - PS417_27285 0.21 +0.1 5,889,884 - PS417_27285 0.21 -0.3 5,889,884 - PS417_27285 0.21 +0.1 5,889,884 - PS417_27285 0.21 +0.4 5,889,893 + PS417_27285 0.22 +1.2 5,889,893 + PS417_27285 0.22 -2.6 5,889,895 + PS417_27285 0.22 +0.5 5,889,895 + PS417_27285 0.22 -0.1 5,889,895 + PS417_27285 0.22 -0.5 5,889,896 - PS417_27285 0.22 +1.1 5,889,896 - PS417_27285 0.22 -1.6 5,890,047 + PS417_27285 0.34 +0.2 5,890,048 - PS417_27285 0.34 -2.6 5,890,050 + PS417_27285 0.34 +2.5 5,890,051 - PS417_27285 0.34 -0.5 5,890,051 - PS417_27285 0.34 -1.4 5,890,051 - PS417_27285 0.34 -2.8 5,890,051 - PS417_27285 0.34 -0.2 5,890,051 - PS417_27285 0.34 -1.0 5,890,051 - +1.5 5,890,123 + PS417_27285 0.39 +0.3 5,890,401 - PS417_27285 0.60 -0.8 5,890,401 - PS417_27285 0.60 -0.0 5,890,544 - PS417_27285 0.71 -2.3 5,890,544 - PS417_27285 0.71 -0.8
Or see this region's nucleotide sequence