Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26585 and PS417_26590 are separated by 67 nucleotides PS417_26590 and PS417_26595 overlap by 4 nucleotides PS417_26595 and PS417_26600 overlap by 7 nucleotides PS417_26600 and PS417_26605 overlap by 4 nucleotides
PS417_26585: PS417_26585 - malonate carrier protein, at 5,748,464 to 5,748,868
_26585
PS417_26590: PS417_26590 - malonate decarboxylase subunit epsilon, at 5,748,936 to 5,749,835
_26590
PS417_26595: PS417_26595 - phosphoribosyl-dephospho-CoA transferase, at 5,749,832 to 5,750,419
_26595
PS417_26600: PS417_26600 - malonate decarboxylase subunit gamma, at 5,750,413 to 5,751,183
_26600
PS417_26605: PS417_26605 - malonate decarboxylase subunit beta, at 5,751,180 to 5,752,022
_26605
Position (kb) 5749
5750
5751 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5748.858 kb on + strand at 5748.862 kb on + strand at 5748.863 kb on - strand at 5748.863 kb on - strand at 5748.949 kb on - strand at 5749.097 kb on - strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.107 kb on + strand, within PS417_26590 at 5749.397 kb on + strand, within PS417_26590 at 5749.408 kb on + strand, within PS417_26590 at 5749.619 kb on - strand, within PS417_26590 at 5749.669 kb on - strand, within PS417_26590 at 5749.967 kb on - strand, within PS417_26595 at 5750.613 kb on - strand, within PS417_26600 at 5750.924 kb on - strand, within PS417_26600 at 5751.071 kb on + strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.072 kb on - strand, within PS417_26600 at 5751.094 kb on + strand, within PS417_26600 at 5751.095 kb on - strand, within PS417_26600 at 5751.199 kb on + strand at 5751.265 kb on + strand, within PS417_26605 at 5751.268 kb on + strand, within PS417_26605
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,748,858 + +1.4 5,748,862 + +0.1 5,748,863 - -0.9 5,748,863 - +1.6 5,748,949 - -0.4 5,749,097 - PS417_26590 0.18 +0.9 5,749,107 + PS417_26590 0.19 -0.6 5,749,107 + PS417_26590 0.19 -3.6 5,749,397 + PS417_26590 0.51 -3.7 5,749,408 + PS417_26590 0.52 -1.7 5,749,619 - PS417_26590 0.76 +0.3 5,749,669 - PS417_26590 0.81 +0.3 5,749,967 - PS417_26595 0.23 +1.4 5,750,613 - PS417_26600 0.26 -3.4 5,750,924 - PS417_26600 0.66 +0.3 5,751,071 + PS417_26600 0.85 +1.0 5,751,072 - PS417_26600 0.85 -1.2 5,751,072 - PS417_26600 0.85 -0.3 5,751,094 + PS417_26600 0.88 +0.6 5,751,095 - PS417_26600 0.88 +0.2 5,751,199 + -0.2 5,751,265 + PS417_26605 0.10 -1.0 5,751,268 + PS417_26605 0.10 -0.4
Or see this region's nucleotide sequence