Strain Fitness in Pseudomonas simiae WCS417 around PS417_26420

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26415 and PS417_26420 are separated by 282 nucleotidesPS417_26420 and PS417_26425 are separated by 61 nucleotidesPS417_26425 and PS417_26430 are separated by 29 nucleotides PS417_26415: PS417_26415 - fructose-1,6-bisphosphate aldolase, at 5,712,957 to 5,714,021 _26415 PS417_26420: PS417_26420 - hypothetical protein, at 5,714,304 to 5,714,639 _26420 PS417_26425: PS417_26425 - hypothetical protein, at 5,714,701 to 5,714,928 _26425 PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 Position (kb) 5714 5715Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5714.092 kb on - strandat 5714.154 kb on + strandat 5714.154 kb on + strandat 5714.155 kb on - strandat 5714.238 kb on - strandat 5714.404 kb on + strand, within PS417_26420at 5714.405 kb on - strand, within PS417_26420at 5715.000 kb on + strandat 5715.073 kb on + strandat 5715.073 kb on + strandat 5715.351 kb on + strand, within PS417_26430

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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5,714,092 - -0.3
5,714,154 + +3.2
5,714,154 + -1.4
5,714,155 - -2.4
5,714,238 - -0.9
5,714,404 + PS417_26420 0.30 -0.5
5,714,405 - PS417_26420 0.30 -2.5
5,715,000 + -0.8
5,715,073 + -1.9
5,715,073 + +0.9
5,715,351 + PS417_26430 0.34 -0.1

Or see this region's nucleotide sequence