Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26060 and PS417_26065 are separated by 100 nucleotides PS417_26065 and PS417_26070 overlap by 4 nucleotides PS417_26070 and PS417_26075 are separated by 109 nucleotides
PS417_26060: PS417_26060 - DNA polymerase III subunit epsilon, at 5,631,828 to 5,632,535
_26060
PS417_26065: PS417_26065 - RNA polymerase sigma factor, at 5,632,636 to 5,633,154
_26065
PS417_26070: PS417_26070 - amino acid ABC transporter substrate-binding protein, at 5,633,151 to 5,634,146
_26070
PS417_26075: PS417_26075 - hypothetical protein, at 5,634,256 to 5,637,069
_26075
Position (kb) 5633
5634
5635 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5632.198 kb on + strand, within PS417_26060 at 5632.480 kb on + strand at 5632.480 kb on + strand at 5632.480 kb on + strand at 5632.480 kb on + strand at 5632.481 kb on - strand at 5632.533 kb on + strand at 5632.533 kb on + strand at 5632.534 kb on - strand at 5632.681 kb on + strand at 5632.682 kb on - strand at 5632.858 kb on + strand, within PS417_26065 at 5632.859 kb on - strand, within PS417_26065 at 5632.859 kb on - strand, within PS417_26065 at 5632.888 kb on + strand, within PS417_26065 at 5632.888 kb on + strand, within PS417_26065 at 5633.023 kb on + strand, within PS417_26065 at 5633.024 kb on - strand, within PS417_26065 at 5633.025 kb on + strand, within PS417_26065 at 5633.026 kb on - strand, within PS417_26065 at 5633.126 kb on - strand at 5633.469 kb on + strand, within PS417_26070 at 5633.469 kb on + strand, within PS417_26070 at 5633.469 kb on + strand, within PS417_26070 at 5633.670 kb on + strand, within PS417_26070 at 5633.670 kb on + strand, within PS417_26070 at 5633.671 kb on - strand, within PS417_26070 at 5633.674 kb on + strand, within PS417_26070 at 5633.675 kb on - strand, within PS417_26070 at 5633.675 kb on - strand, within PS417_26070 at 5634.135 kb on - strand at 5634.135 kb on - strand at 5634.204 kb on + strand at 5634.223 kb on - strand at 5634.240 kb on + strand at 5634.241 kb on - strand at 5634.241 kb on - strand at 5634.241 kb on - strand at 5634.292 kb on - strand at 5634.377 kb on + strand at 5634.515 kb on - strand at 5634.982 kb on + strand, within PS417_26075 at 5634.982 kb on + strand, within PS417_26075 at 5634.983 kb on - strand, within PS417_26075
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,632,198 + PS417_26060 0.52 +1.2 5,632,480 + -1.6 5,632,480 + -0.8 5,632,480 + -3.9 5,632,480 + +0.2 5,632,481 - -2.2 5,632,533 + +0.6 5,632,533 + +1.2 5,632,534 - -0.2 5,632,681 + +0.2 5,632,682 - -1.4 5,632,858 + PS417_26065 0.43 +0.4 5,632,859 - PS417_26065 0.43 +0.1 5,632,859 - PS417_26065 0.43 -3.3 5,632,888 + PS417_26065 0.49 +0.2 5,632,888 + PS417_26065 0.49 -0.4 5,633,023 + PS417_26065 0.75 -0.2 5,633,024 - PS417_26065 0.75 +0.9 5,633,025 + PS417_26065 0.75 +1.0 5,633,026 - PS417_26065 0.75 +0.0 5,633,126 - -4.7 5,633,469 + PS417_26070 0.32 -1.4 5,633,469 + PS417_26070 0.32 -2.9 5,633,469 + PS417_26070 0.32 +1.5 5,633,670 + PS417_26070 0.52 -0.1 5,633,670 + PS417_26070 0.52 -0.2 5,633,671 - PS417_26070 0.52 -1.2 5,633,674 + PS417_26070 0.53 +0.5 5,633,675 - PS417_26070 0.53 -2.3 5,633,675 - PS417_26070 0.53 -0.9 5,634,135 - -2.2 5,634,135 - -0.2 5,634,204 + +0.4 5,634,223 - +2.8 5,634,240 + +1.0 5,634,241 - +1.0 5,634,241 - +0.7 5,634,241 - -1.9 5,634,292 - +0.3 5,634,377 + -0.4 5,634,515 - +0.9 5,634,982 + PS417_26075 0.26 +0.2 5,634,982 + PS417_26075 0.26 -0.9 5,634,983 - PS417_26075 0.26 -1.0
Or see this region's nucleotide sequence