Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25750 and PS417_25755 are separated by 157 nucleotides PS417_25755 and PS417_25760 are separated by 43 nucleotides
PS417_25750: PS417_25750 - polyamine ABC transporter substrate-binding protein, at 5,558,567 to 5,559,814
_25750
PS417_25755: PS417_25755 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,559,972 to 5,561,012
_25755
PS417_25760: PS417_25760 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,561,056 to 5,562,168
_25760
Position (kb) 5559
5560
5561
5562 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5559.053 kb on + strand, within PS417_25750 at 5559.054 kb on - strand, within PS417_25750 at 5559.156 kb on + strand, within PS417_25750 at 5559.156 kb on + strand, within PS417_25750 at 5559.217 kb on + strand, within PS417_25750 at 5559.312 kb on + strand, within PS417_25750 at 5559.313 kb on - strand, within PS417_25750 at 5559.406 kb on - strand, within PS417_25750 at 5559.406 kb on - strand, within PS417_25750 at 5559.555 kb on + strand, within PS417_25750 at 5559.556 kb on - strand, within PS417_25750 at 5559.678 kb on - strand, within PS417_25750 at 5559.678 kb on - strand, within PS417_25750 at 5559.914 kb on + strand at 5559.914 kb on + strand at 5559.914 kb on + strand at 5559.914 kb on + strand at 5559.914 kb on + strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.915 kb on - strand at 5559.916 kb on + strand at 5559.916 kb on + strand at 5559.917 kb on - strand at 5559.963 kb on + strand at 5559.973 kb on + strand at 5559.973 kb on + strand at 5559.973 kb on + strand at 5560.138 kb on + strand, within PS417_25755 at 5560.327 kb on + strand, within PS417_25755 at 5560.328 kb on - strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.469 kb on - strand, within PS417_25755 at 5560.469 kb on - strand, within PS417_25755 at 5560.520 kb on - strand, within PS417_25755 at 5560.681 kb on + strand, within PS417_25755 at 5560.834 kb on + strand, within PS417_25755 at 5560.835 kb on - strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5561.209 kb on + strand, within PS417_25760 at 5561.209 kb on + strand, within PS417_25760 at 5561.209 kb on + strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.225 kb on + strand, within PS417_25760 at 5561.225 kb on + strand, within PS417_25760 at 5561.226 kb on - strand, within PS417_25760 at 5561.480 kb on + strand, within PS417_25760 at 5561.480 kb on + strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.894 kb on + strand, within PS417_25760 at 5561.894 kb on + strand, within PS417_25760 at 5561.925 kb on + strand, within PS417_25760
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,559,053 + PS417_25750 0.39 -0.4 5,559,054 - PS417_25750 0.39 -1.8 5,559,156 + PS417_25750 0.47 -2.4 5,559,156 + PS417_25750 0.47 +0.5 5,559,217 + PS417_25750 0.52 +1.6 5,559,312 + PS417_25750 0.60 -1.2 5,559,313 - PS417_25750 0.60 +1.5 5,559,406 - PS417_25750 0.67 +2.4 5,559,406 - PS417_25750 0.67 +2.7 5,559,555 + PS417_25750 0.79 +0.8 5,559,556 - PS417_25750 0.79 +0.0 5,559,678 - PS417_25750 0.89 -2.7 5,559,678 - PS417_25750 0.89 +0.7 5,559,914 + -1.2 5,559,914 + -3.1 5,559,914 + +0.1 5,559,914 + +0.6 5,559,914 + +1.9 5,559,915 - +0.3 5,559,915 - +4.5 5,559,915 - +0.2 5,559,915 - -1.0 5,559,915 - -3.3 5,559,915 - -1.4 5,559,915 - -1.0 5,559,915 - -2.6 5,559,916 + +0.4 5,559,916 + -0.5 5,559,917 - -1.0 5,559,963 + -1.8 5,559,973 + -1.8 5,559,973 + -0.5 5,559,973 + -1.8 5,560,138 + PS417_25755 0.16 -0.8 5,560,327 + PS417_25755 0.34 +0.8 5,560,328 - PS417_25755 0.34 -1.0 5,560,468 + PS417_25755 0.48 -1.9 5,560,468 + PS417_25755 0.48 -1.6 5,560,468 + PS417_25755 0.48 +2.0 5,560,469 - PS417_25755 0.48 -4.0 5,560,469 - PS417_25755 0.48 -1.0 5,560,520 - PS417_25755 0.53 -3.4 5,560,681 + PS417_25755 0.68 +0.1 5,560,834 + PS417_25755 0.83 +0.7 5,560,835 - PS417_25755 0.83 +0.5 5,560,882 + PS417_25755 0.87 +2.7 5,560,882 + PS417_25755 0.87 -1.0 5,560,882 + -0.2 5,560,882 + PS417_25755 0.87 +0.1 5,560,882 + PS417_25755 0.87 -0.6 5,560,883 - PS417_25755 0.88 -0.8 5,560,883 - PS417_25755 0.88 -1.1 5,560,883 - PS417_25755 0.88 -1.0 5,560,883 - PS417_25755 0.88 +1.2 5,561,209 + PS417_25760 0.14 +0.9 5,561,209 + PS417_25760 0.14 +0.0 5,561,209 + PS417_25760 0.14 -1.0 5,561,210 - PS417_25760 0.14 -0.2 5,561,210 - PS417_25760 0.14 +1.0 5,561,210 - PS417_25760 0.14 -0.2 5,561,225 + PS417_25760 0.15 -0.3 5,561,225 + PS417_25760 0.15 -2.2 5,561,226 - PS417_25760 0.15 +0.4 5,561,480 + PS417_25760 0.38 -0.4 5,561,480 + PS417_25760 0.38 -0.6 5,561,580 - PS417_25760 0.47 -2.2 5,561,580 - PS417_25760 0.47 +0.9 5,561,580 - PS417_25760 0.47 +1.4 5,561,894 + PS417_25760 0.75 +0.4 5,561,894 + PS417_25760 0.75 -3.1 5,561,925 + PS417_25760 0.78 -0.6
Or see this region's nucleotide sequence