Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25375 and PS417_25380 are separated by 522 nucleotides PS417_25380 and PS417_25385 are separated by 159 nucleotides PS417_25385 and PS417_25390 are separated by 9 nucleotides
PS417_25375: PS417_25375 - hypothetical protein, at 5,494,419 to 5,496,899
_25375
PS417_25380: PS417_25380 - hypothetical protein, at 5,497,422 to 5,497,613
_25380
PS417_25385: PS417_25385 - single-stranded DNA-binding protein, at 5,497,773 to 5,498,288
_25385
PS417_25390: PS417_25390 - MFS transporter, at 5,498,298 to 5,499,692
_25390
Position (kb) 5497
5498
5499 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5496.804 kb on - strand at 5496.882 kb on + strand at 5496.883 kb on - strand at 5496.945 kb on + strand at 5496.951 kb on + strand at 5496.978 kb on - strand at 5497.016 kb on - strand at 5497.028 kb on - strand at 5497.028 kb on - strand at 5497.028 kb on - strand at 5497.148 kb on + strand at 5497.149 kb on - strand at 5497.149 kb on - strand at 5497.151 kb on + strand at 5497.151 kb on + strand at 5497.152 kb on - strand at 5497.167 kb on + strand at 5497.167 kb on + strand at 5497.167 kb on + strand at 5497.242 kb on - strand at 5497.250 kb on + strand at 5497.323 kb on + strand at 5497.323 kb on + strand at 5497.324 kb on - strand at 5497.324 kb on - strand at 5497.338 kb on - strand at 5497.355 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.432 kb on + strand at 5497.433 kb on - strand at 5497.433 kb on - strand at 5497.433 kb on - strand at 5497.442 kb on + strand, within PS417_25380 at 5497.508 kb on + strand, within PS417_25380 at 5497.523 kb on - strand at 5497.525 kb on + strand, within PS417_25380 at 5497.525 kb on + strand, within PS417_25380 at 5497.525 kb on + strand, within PS417_25380 at 5497.562 kb on + strand, within PS417_25380 at 5497.606 kb on - strand at 5497.620 kb on + strand at 5497.652 kb on + strand at 5497.652 kb on + strand at 5497.653 kb on - strand at 5497.655 kb on + strand at 5497.655 kb on + strand at 5497.655 kb on + strand at 5497.656 kb on - strand at 5497.695 kb on + strand at 5497.723 kb on + strand at 5497.724 kb on - strand at 5497.724 kb on - strand at 5497.727 kb on + strand at 5497.755 kb on + strand at 5497.756 kb on - strand at 5497.767 kb on + strand at 5497.768 kb on - strand at 5497.768 kb on - strand at 5498.381 kb on - strand at 5498.504 kb on - strand, within PS417_25390 at 5498.523 kb on - strand, within PS417_25390 at 5498.654 kb on - strand, within PS417_25390 at 5498.802 kb on + strand, within PS417_25390 at 5498.802 kb on + strand, within PS417_25390 at 5498.873 kb on - strand, within PS417_25390 at 5499.013 kb on - strand, within PS417_25390 at 5499.027 kb on + strand, within PS417_25390 at 5499.028 kb on - strand, within PS417_25390
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,496,804 - +0.6 5,496,882 + +1.4 5,496,883 - -1.1 5,496,945 + +0.9 5,496,951 + +0.4 5,496,978 - +1.6 5,497,016 - +0.2 5,497,028 - -2.5 5,497,028 - -1.2 5,497,028 - -0.9 5,497,148 + -0.7 5,497,149 - +0.1 5,497,149 - -2.1 5,497,151 + +0.6 5,497,151 + -0.0 5,497,152 - +0.8 5,497,167 + -0.8 5,497,167 + -0.8 5,497,167 + -0.5 5,497,242 - -1.7 5,497,250 + +4.5 5,497,323 + +1.6 5,497,323 + +0.5 5,497,324 - +1.1 5,497,324 - +0.8 5,497,338 - -0.0 5,497,355 + +0.5 5,497,432 + +1.0 5,497,432 + -1.9 5,497,432 + -0.1 5,497,432 + -1.7 5,497,433 - -2.4 5,497,433 - -0.2 5,497,433 - -1.0 5,497,442 + PS417_25380 0.10 +0.3 5,497,508 + PS417_25380 0.45 -2.4 5,497,523 - +0.3 5,497,525 + PS417_25380 0.54 -0.1 5,497,525 + PS417_25380 0.54 -2.5 5,497,525 + PS417_25380 0.54 -2.0 5,497,562 + PS417_25380 0.73 -0.3 5,497,606 - -2.2 5,497,620 + +1.6 5,497,652 + -2.6 5,497,652 + +0.3 5,497,653 - +4.2 5,497,655 + +2.5 5,497,655 + +1.3 5,497,655 + -2.2 5,497,656 - +0.6 5,497,695 + -0.7 5,497,723 + -0.9 5,497,724 - +1.7 5,497,724 - +0.2 5,497,727 + -0.6 5,497,755 + +0.4 5,497,756 - -0.2 5,497,767 + -1.7 5,497,768 - +0.1 5,497,768 - +1.2 5,498,381 - -0.8 5,498,504 - PS417_25390 0.15 -2.5 5,498,523 - PS417_25390 0.16 -2.2 5,498,654 - PS417_25390 0.26 +1.9 5,498,802 + PS417_25390 0.36 +1.9 5,498,802 + PS417_25390 0.36 +1.6 5,498,873 - PS417_25390 0.41 -0.5 5,499,013 - PS417_25390 0.51 -1.5 5,499,027 + PS417_25390 0.52 +0.4 5,499,028 - PS417_25390 0.52 +1.1
Or see this region's nucleotide sequence