Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24625 and PS417_24630 are separated by 230 nucleotides PS417_24630 and PS417_24635 overlap by 8 nucleotides PS417_24635 and PS417_24640 are separated by 41 nucleotides
PS417_24625: PS417_24625 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 5,343,309 to 5,344,637
_24625
PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872
_24630
PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323
_24635
PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204
_24640
Position (kb) 5344
5345
5346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5344.320 kb on + strand, within PS417_24625 at 5344.321 kb on - strand, within PS417_24625 at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on + strand at 5344.695 kb on - strand at 5344.696 kb on - strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.706 kb on + strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.707 kb on - strand at 5344.788 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.792 kb on + strand at 5344.793 kb on - strand at 5344.793 kb on - strand at 5345.123 kb on + strand, within PS417_24630 at 5345.453 kb on + strand, within PS417_24630 at 5345.537 kb on + strand, within PS417_24630 at 5345.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,344,320 + PS417_24625 0.76 -2.0 5,344,321 - PS417_24625 0.76 +1.0 5,344,695 + +0.4 5,344,695 + -2.9 5,344,695 + -1.4 5,344,695 - -0.1 5,344,696 - +0.4 5,344,706 + +0.9 5,344,706 + +1.6 5,344,706 + -1.6 5,344,707 - +2.0 5,344,707 - -0.3 5,344,707 - +0.1 5,344,707 - -0.2 5,344,707 - -0.6 5,344,788 + -0.4 5,344,792 + +0.7 5,344,792 + +2.0 5,344,792 + +0.9 5,344,792 + +2.6 5,344,793 - +1.9 5,344,793 - -2.1 5,345,123 + PS417_24630 0.25 -0.1 5,345,453 + PS417_24630 0.58 -1.5 5,345,537 + PS417_24630 0.67 -3.3 5,345,813 + -0.2
Or see this region's nucleotide sequence