Strain Fitness in Pseudomonas simiae WCS417 around PS417_24595

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24590 and PS417_24595 are separated by 100 nucleotidesPS417_24595 and PS417_24600 are separated by 277 nucleotides PS417_24590: PS417_24590 - acyl-CoA dehydrogenase, at 5,334,781 to 5,336,433 _24590 PS417_24595: PS417_24595 - histidine kinase, at 5,336,534 to 5,338,924 _24595 PS417_24600: PS417_24600 - hydrogenase, at 5,339,202 to 5,339,999 _24600 Position (kb) 5336 5337 5338 5339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5335.661 kb on + strand, within PS417_24590at 5335.661 kb on + strand, within PS417_24590at 5335.796 kb on + strand, within PS417_24590at 5335.938 kb on - strand, within PS417_24590at 5336.064 kb on - strand, within PS417_24590at 5336.201 kb on + strand, within PS417_24590at 5336.360 kb on + strandat 5336.526 kb on + strandat 5336.526 kb on + strandat 5336.701 kb on + strandat 5336.701 kb on + strandat 5336.701 kb on + strandat 5336.793 kb on - strand, within PS417_24595at 5337.111 kb on + strand, within PS417_24595at 5337.392 kb on - strand, within PS417_24595at 5337.452 kb on + strand, within PS417_24595at 5337.558 kb on + strand, within PS417_24595at 5337.558 kb on + strand, within PS417_24595at 5337.679 kb on + strand, within PS417_24595at 5337.828 kb on + strand, within PS417_24595at 5337.828 kb on + strand, within PS417_24595at 5337.829 kb on - strand, within PS417_24595at 5337.829 kb on - strand, within PS417_24595at 5337.843 kb on - strand, within PS417_24595at 5337.874 kb on + strand, within PS417_24595at 5337.874 kb on + strand, within PS417_24595at 5337.875 kb on - strand, within PS417_24595at 5338.218 kb on + strand, within PS417_24595at 5338.218 kb on + strand, within PS417_24595at 5338.251 kb on + strand, within PS417_24595at 5338.251 kb on + strand, within PS417_24595at 5338.251 kb on + strandat 5338.252 kb on - strand, within PS417_24595at 5338.252 kb on - strand, within PS417_24595at 5338.252 kb on - strand, within PS417_24595at 5338.252 kb on - strand, within PS417_24595at 5338.273 kb on - strand, within PS417_24595at 5338.273 kb on - strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.281 kb on + strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.282 kb on - strand, within PS417_24595at 5338.284 kb on + strand, within PS417_24595at 5338.291 kb on - strand, within PS417_24595at 5338.291 kb on - strand, within PS417_24595at 5338.314 kb on + strand, within PS417_24595at 5338.314 kb on + strand, within PS417_24595at 5338.314 kb on + strand, within PS417_24595at 5338.314 kb on + strand, within PS417_24595at 5338.314 kb on + strand, within PS417_24595at 5338.314 kb on + strand, within PS417_24595at 5338.315 kb on - strand, within PS417_24595at 5338.315 kb on - strand, within PS417_24595at 5338.315 kb on - strand, within PS417_24595at 5338.315 kb on - strand, within PS417_24595at 5338.357 kb on - strand, within PS417_24595at 5338.357 kb on - strand, within PS417_24595at 5338.357 kb on - strand, within PS417_24595at 5338.374 kb on + strand, within PS417_24595at 5338.374 kb on + strand, within PS417_24595at 5338.375 kb on - strand, within PS417_24595at 5338.375 kb on - strand, within PS417_24595at 5338.375 kb on - strand, within PS417_24595at 5338.375 kb on - strand, within PS417_24595at 5338.464 kb on + strand, within PS417_24595at 5338.509 kb on + strand, within PS417_24595at 5338.599 kb on + strand, within PS417_24595at 5338.600 kb on - strand, within PS417_24595at 5338.600 kb on - strand, within PS417_24595at 5338.677 kb on + strand, within PS417_24595at 5338.678 kb on - strand, within PS417_24595at 5338.924 kb on + strandat 5338.924 kb on + strandat 5338.987 kb on + strandat 5338.988 kb on - strandat 5338.988 kb on - strandat 5338.999 kb on - strandat 5339.023 kb on + strandat 5339.023 kb on + strandat 5339.023 kb on + strandat 5339.024 kb on - strandat 5339.029 kb on - strandat 5339.029 kb on - strandat 5339.029 kb on - strandat 5339.078 kb on + strandat 5339.207 kb on + strandat 5339.208 kb on - strandat 5339.211 kb on + strandat 5339.211 kb on + strandat 5339.211 kb on + strandat 5339.211 kb on + strandat 5339.212 kb on - strandat 5339.212 kb on - strandat 5339.212 kb on - strandat 5339.212 kb on - strandat 5339.374 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.703 kb on + strand, within PS417_24600at 5339.820 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.913 kb on + strand, within PS417_24600at 5339.914 kb on - strand, within PS417_24600

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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5,335,661 + PS417_24590 0.53 +0.0
5,335,661 + PS417_24590 0.53 +1.2
5,335,796 + PS417_24590 0.61 +0.4
5,335,938 - PS417_24590 0.70 -0.1
5,336,064 - PS417_24590 0.78 -0.9
5,336,201 + PS417_24590 0.86 +0.3
5,336,360 + -1.8
5,336,526 + +1.3
5,336,526 + +1.4
5,336,701 + +3.4
5,336,701 + +0.7
5,336,701 + -1.7
5,336,793 - PS417_24595 0.11 +1.6
5,337,111 + PS417_24595 0.24 +0.1
5,337,392 - PS417_24595 0.36 +1.0
5,337,452 + PS417_24595 0.38 +1.2
5,337,558 + PS417_24595 0.43 -0.9
5,337,558 + PS417_24595 0.43 +0.1
5,337,679 + PS417_24595 0.48 -0.5
5,337,828 + PS417_24595 0.54 +0.1
5,337,828 + PS417_24595 0.54 +1.1
5,337,829 - PS417_24595 0.54 +0.2
5,337,829 - PS417_24595 0.54 +0.2
5,337,843 - PS417_24595 0.55 +1.2
5,337,874 + PS417_24595 0.56 -0.2
5,337,874 + PS417_24595 0.56 +0.8
5,337,875 - PS417_24595 0.56 -0.6
5,338,218 + PS417_24595 0.70 +0.5
5,338,218 + PS417_24595 0.70 +0.3
5,338,251 + PS417_24595 0.72 +1.2
5,338,251 + PS417_24595 0.72 +1.3
5,338,251 + +1.0
5,338,252 - PS417_24595 0.72 +1.2
5,338,252 - PS417_24595 0.72 +0.9
5,338,252 - PS417_24595 0.72 +1.3
5,338,252 - PS417_24595 0.72 +1.1
5,338,273 - PS417_24595 0.73 +1.5
5,338,273 - PS417_24595 0.73 +0.5
5,338,281 + PS417_24595 0.73 +0.5
5,338,281 + PS417_24595 0.73 -0.3
5,338,281 + PS417_24595 0.73 +0.2
5,338,281 + PS417_24595 0.73 +1.7
5,338,281 + PS417_24595 0.73 +1.0
5,338,281 + PS417_24595 0.73 +0.3
5,338,281 + PS417_24595 0.73 +0.8
5,338,281 + PS417_24595 0.73 -2.3
5,338,281 + PS417_24595 0.73 +0.5
5,338,281 + PS417_24595 0.73 +0.8
5,338,281 + PS417_24595 0.73 -0.1
5,338,282 - PS417_24595 0.73 +1.1
5,338,282 - PS417_24595 0.73 +0.8
5,338,282 - PS417_24595 0.73 -0.2
5,338,282 - PS417_24595 0.73 +1.1
5,338,282 - PS417_24595 0.73 -1.8
5,338,282 - PS417_24595 0.73 +2.2
5,338,282 - PS417_24595 0.73 +1.3
5,338,284 + PS417_24595 0.73 -2.4
5,338,291 - PS417_24595 0.73 +0.9
5,338,291 - PS417_24595 0.73 +1.4
5,338,314 + PS417_24595 0.74 +2.4
5,338,314 + PS417_24595 0.74 +0.2
5,338,314 + PS417_24595 0.74 +1.8
5,338,314 + PS417_24595 0.74 +2.0
5,338,314 + PS417_24595 0.74 +0.1
5,338,314 + PS417_24595 0.74 +1.3
5,338,315 - PS417_24595 0.74 -2.4
5,338,315 - PS417_24595 0.74 -1.2
5,338,315 - PS417_24595 0.74 -2.2
5,338,315 - PS417_24595 0.74 -0.2
5,338,357 - PS417_24595 0.76 +1.8
5,338,357 - PS417_24595 0.76 +1.9
5,338,357 - PS417_24595 0.76 -2.8
5,338,374 + PS417_24595 0.77 -0.2
5,338,374 + PS417_24595 0.77 +2.1
5,338,375 - PS417_24595 0.77 -0.1
5,338,375 - PS417_24595 0.77 +0.5
5,338,375 - PS417_24595 0.77 -0.6
5,338,375 - PS417_24595 0.77 -2.6
5,338,464 + PS417_24595 0.81 +1.9
5,338,509 + PS417_24595 0.83 +1.2
5,338,599 + PS417_24595 0.86 -0.1
5,338,600 - PS417_24595 0.86 -0.3
5,338,600 - PS417_24595 0.86 +0.4
5,338,677 + PS417_24595 0.90 +1.0
5,338,678 - PS417_24595 0.90 +1.2
5,338,924 + -0.3
5,338,924 + +0.7
5,338,987 + -3.0
5,338,988 - -0.4
5,338,988 - +1.0
5,338,999 - -0.8
5,339,023 + -0.6
5,339,023 + +0.1
5,339,023 + +1.2
5,339,024 - -1.3
5,339,029 - -2.4
5,339,029 - -1.0
5,339,029 - +0.8
5,339,078 + +1.4
5,339,207 + -2.4
5,339,208 - +2.9
5,339,211 + +0.8
5,339,211 + +0.9
5,339,211 + -0.1
5,339,211 + +0.8
5,339,212 - +3.0
5,339,212 - +3.3
5,339,212 - -1.2
5,339,212 - -0.2
5,339,374 + PS417_24600 0.22 +0.5
5,339,703 + PS417_24600 0.63 +0.5
5,339,703 + PS417_24600 0.63 +0.9
5,339,703 + PS417_24600 0.63 -0.9
5,339,820 + PS417_24600 0.77 +0.6
5,339,913 + PS417_24600 0.89 +0.1
5,339,913 + PS417_24600 0.89 -2.6
5,339,913 + PS417_24600 0.89 -1.2
5,339,914 - PS417_24600 0.89 -0.7

Or see this region's nucleotide sequence