Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24470 and PS417_24475 are separated by 48 nucleotides PS417_24475 and PS417_24480 overlap by 4 nucleotides PS417_24480 and PS417_24485 are separated by 38 nucleotides PS417_24485 and PS417_24490 are separated by 75 nucleotides
PS417_24470: PS417_24470 - hypothetical protein, at 5,311,962 to 5,312,933
_24470
PS417_24475: PS417_24475 - HAD family hydrolase, at 5,312,982 to 5,313,569
_24475
PS417_24480: PS417_24480 - palmitoyl-CoA hydrolase, at 5,313,566 to 5,314,435
_24480
PS417_24485: PS417_24485 - GNAT family acetyltransferase, at 5,314,474 to 5,315,043
_24485
PS417_24490: PS417_24490 - hypothetical protein, at 5,315,119 to 5,316,039
_24490
Position (kb) 5313
5314
5315 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5312.685 kb on + strand, within PS417_24470 at 5312.685 kb on + strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.686 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.707 kb on - strand, within PS417_24470 at 5312.808 kb on + strand, within PS417_24470 at 5312.808 kb on + strand at 5312.809 kb on - strand, within PS417_24470 at 5312.809 kb on - strand, within PS417_24470 at 5312.817 kb on + strand, within PS417_24470 at 5312.897 kb on + strand at 5312.897 kb on + strand at 5312.898 kb on - strand at 5312.920 kb on + strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.921 kb on - strand at 5312.983 kb on + strand at 5312.983 kb on + strand at 5312.983 kb on + strand at 5313.552 kb on + strand at 5313.553 kb on - strand at 5313.639 kb on + strand at 5313.640 kb on - strand at 5313.697 kb on - strand, within PS417_24480 at 5313.766 kb on + strand, within PS417_24480 at 5313.767 kb on - strand, within PS417_24480 at 5313.847 kb on - strand, within PS417_24480 at 5313.847 kb on - strand at 5313.900 kb on + strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.901 kb on - strand, within PS417_24480 at 5313.995 kb on - strand, within PS417_24480 at 5313.995 kb on - strand, within PS417_24480 at 5314.108 kb on - strand, within PS417_24480 at 5314.210 kb on - strand, within PS417_24480 at 5314.249 kb on - strand, within PS417_24480 at 5314.249 kb on - strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.283 kb on + strand, within PS417_24480 at 5314.284 kb on - strand, within PS417_24480 at 5314.284 kb on - strand, within PS417_24480 at 5314.424 kb on + strand at 5314.424 kb on + strand at 5314.436 kb on - strand at 5314.436 kb on - strand at 5314.436 kb on - strand at 5314.454 kb on + strand at 5315.074 kb on + strand at 5315.074 kb on + strand at 5315.075 kb on - strand at 5315.086 kb on - strand at 5315.149 kb on + strand at 5315.149 kb on + strand at 5315.150 kb on - strand at 5315.150 kb on - strand at 5315.150 kb on - strand at 5315.150 kb on - strand at 5315.318 kb on - strand, within PS417_24490 at 5315.396 kb on + strand, within PS417_24490
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,312,685 + PS417_24470 0.74 +0.9 5,312,685 + PS417_24470 0.74 -1.6 5,312,686 - PS417_24470 0.74 -0.3 5,312,686 - PS417_24470 0.74 +1.3 5,312,686 - PS417_24470 0.74 -0.4 5,312,686 - PS417_24470 0.74 -1.4 5,312,686 - PS417_24470 0.74 -0.2 5,312,686 - PS417_24470 0.74 +0.0 5,312,686 - PS417_24470 0.74 +0.3 5,312,686 - PS417_24470 0.74 +0.7 5,312,686 - PS417_24470 0.74 -0.6 5,312,707 - PS417_24470 0.77 -2.1 5,312,707 - PS417_24470 0.77 +1.8 5,312,808 + PS417_24470 0.87 -1.2 5,312,808 + +2.2 5,312,809 - PS417_24470 0.87 -3.3 5,312,809 - PS417_24470 0.87 +0.6 5,312,817 + PS417_24470 0.88 +0.9 5,312,897 + +1.2 5,312,897 + -0.7 5,312,898 - -0.0 5,312,920 + -1.0 5,312,921 - +0.4 5,312,921 - +2.1 5,312,921 - +0.6 5,312,983 + -0.7 5,312,983 + -2.1 5,312,983 + +0.3 5,313,552 + +2.4 5,313,553 - -0.6 5,313,639 + -0.2 5,313,640 - -1.2 5,313,697 - PS417_24480 0.15 -1.8 5,313,766 + PS417_24480 0.23 -0.2 5,313,767 - PS417_24480 0.23 -2.3 5,313,847 - PS417_24480 0.32 +1.6 5,313,847 - -0.2 5,313,900 + PS417_24480 0.38 -3.2 5,313,901 - PS417_24480 0.39 +0.8 5,313,901 - PS417_24480 0.39 +1.8 5,313,901 - PS417_24480 0.39 +0.3 5,313,995 - PS417_24480 0.49 +0.3 5,313,995 - PS417_24480 0.49 +1.2 5,314,108 - PS417_24480 0.62 +0.5 5,314,210 - PS417_24480 0.74 +2.0 5,314,249 - PS417_24480 0.79 +1.0 5,314,249 - PS417_24480 0.79 +0.8 5,314,283 + PS417_24480 0.82 +1.8 5,314,283 + PS417_24480 0.82 -2.0 5,314,283 + PS417_24480 0.82 +0.6 5,314,284 - PS417_24480 0.83 +0.4 5,314,284 - PS417_24480 0.83 -2.4 5,314,424 + -2.3 5,314,424 + +1.0 5,314,436 - +3.6 5,314,436 - -1.4 5,314,436 - -0.6 5,314,454 + +1.0 5,315,074 + +1.0 5,315,074 + -0.0 5,315,075 - +0.6 5,315,086 - +0.2 5,315,149 + -4.5 5,315,149 + -0.1 5,315,150 - +0.2 5,315,150 - +0.7 5,315,150 - -2.2 5,315,150 - +1.0 5,315,318 - PS417_24490 0.22 -2.2 5,315,396 + PS417_24490 0.30 +0.3
Or see this region's nucleotide sequence