Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02415 and PS417_02420 are separated by 123 nucleotides PS417_02420 and PS417_02425 are separated by 15 nucleotides PS417_02425 and PS417_02430 are separated by 57 nucleotides
PS417_02415: PS417_02415 - phosphoserine phosphatase, at 553,413 to 554,627
_02415
PS417_02420: PS417_02420 - phosphatidylserine decarboxylase, at 554,751 to 555,611
_02420
PS417_02425: PS417_02425 - thiosulfate sulfurtransferase, at 555,627 to 556,442
_02425
PS417_02430: PS417_02430 - histidine kinase, at 556,500 to 558,035
_02430
Position (kb) 555
556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 554.707 kb on - strand at 554.759 kb on + strand at 554.760 kb on - strand at 554.760 kb on - strand at 555.622 kb on - strand at 555.683 kb on - strand at 555.683 kb on - strand at 555.724 kb on + strand, within PS417_02425 at 555.725 kb on - strand, within PS417_02425 at 555.986 kb on - strand, within PS417_02425 at 556.115 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.557 kb on - strand at 556.775 kb on + strand, within PS417_02430 at 556.776 kb on - strand, within PS417_02430 at 556.778 kb on + strand, within PS417_02430 at 556.779 kb on - strand, within PS417_02430 at 556.779 kb on - strand, within PS417_02430 at 556.973 kb on + strand, within PS417_02430 at 557.049 kb on + strand, within PS417_02430 at 557.049 kb on + strand, within PS417_02430 at 557.049 kb on + strand, within PS417_02430 at 557.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 554,707 - -1.1 554,759 + -1.9 554,760 - +0.2 554,760 - +0.9 555,622 - +0.2 555,683 - +0.6 555,683 - +0.7 555,724 + PS417_02425 0.12 +2.4 555,725 - PS417_02425 0.12 +1.8 555,986 - PS417_02425 0.44 +1.4 556,115 - PS417_02425 0.60 +1.4 556,193 - PS417_02425 0.69 +2.4 556,193 - PS417_02425 0.69 +2.9 556,193 - PS417_02425 0.69 +1.6 556,557 - +0.7 556,775 + PS417_02430 0.18 +0.5 556,776 - PS417_02430 0.18 +2.8 556,778 + PS417_02430 0.18 +0.5 556,779 - PS417_02430 0.18 +0.7 556,779 - PS417_02430 0.18 -1.9 556,973 + PS417_02430 0.31 -3.0 557,049 + PS417_02430 0.36 +0.4 557,049 + PS417_02430 0.36 +0.1 557,049 + PS417_02430 0.36 -0.1 557,050 - -0.1
Or see this region's nucleotide sequence