Strain Fitness in Pseudomonas simiae WCS417 around PS417_02395

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02390 and PS417_02395 overlap by 1 nucleotidesPS417_02395 and PS417_02400 are separated by 73 nucleotides PS417_02390: PS417_02390 - DNA topoisomerase IV subunit B, at 545,465 to 547,372 _02390 PS417_02395: PS417_02395 - DNA topoisomerase IV subunit B, at 547,372 to 548,376 _02395 PS417_02400: PS417_02400 - DNA topoisomerase IV subunit A, at 548,450 to 550,714 _02400 Position (kb) 547 548 549Strain fitness (log2 ratio) -1 0 1at 547.533 kb on - strand, within PS417_02395at 547.533 kb on - strand, within PS417_02395at 547.568 kb on - strand, within PS417_02395at 547.609 kb on + strand, within PS417_02395at 547.744 kb on + strand, within PS417_02395at 547.745 kb on - strandat 548.218 kb on + strand, within PS417_02395

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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547,533 - PS417_02395 0.16 -1.7
547,533 - PS417_02395 0.16 -0.6
547,568 - PS417_02395 0.20 -1.3
547,609 + PS417_02395 0.24 +0.3
547,744 + PS417_02395 0.37 -1.2
547,745 - -0.1
548,218 + PS417_02395 0.84 -1.1

Or see this region's nucleotide sequence