Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23525 and PS417_23530 overlap by 32 nucleotides PS417_23530 and PS417_23535 are separated by 221 nucleotides PS417_23535 and PS417_23540 are separated by 101 nucleotides
PS417_23525: PS417_23525 - glycoside hydrolase, at 5,089,695 to 5,090,897
_23525
PS417_23530: PS417_23530 - 1,2-oxophytodienoate reductase, at 5,090,866 to 5,091,969
_23530
PS417_23535: PS417_23535 - glutathione peroxidase, at 5,092,191 to 5,092,673
_23535
PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239
_23540
Position (kb) 5090
5091
5092 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5089.981 kb on - strand, within PS417_23525 at 5089.981 kb on - strand, within PS417_23525 at 5090.080 kb on - strand, within PS417_23525 at 5090.080 kb on - strand, within PS417_23525 at 5090.127 kb on + strand, within PS417_23525 at 5090.128 kb on - strand, within PS417_23525 at 5090.145 kb on - strand, within PS417_23525 at 5090.300 kb on - strand, within PS417_23525 at 5090.326 kb on - strand, within PS417_23525 at 5090.326 kb on - strand, within PS417_23525 at 5090.397 kb on + strand, within PS417_23525 at 5090.642 kb on + strand, within PS417_23525 at 5090.643 kb on - strand, within PS417_23525 at 5090.656 kb on - strand, within PS417_23525 at 5090.665 kb on + strand, within PS417_23525 at 5090.666 kb on - strand, within PS417_23525 at 5090.666 kb on - strand, within PS417_23525 at 5090.867 kb on + strand at 5090.867 kb on + strand at 5090.868 kb on - strand at 5090.971 kb on + strand at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.279 kb on - strand, within PS417_23530 at 5091.279 kb on - strand, within PS417_23530 at 5091.449 kb on + strand, within PS417_23530 at 5091.603 kb on - strand, within PS417_23530 at 5091.694 kb on + strand, within PS417_23530 at 5091.842 kb on + strand, within PS417_23530 at 5092.038 kb on + strand at 5092.039 kb on - strand at 5092.140 kb on + strand at 5092.176 kb on + strand at 5092.176 kb on + strand at 5092.188 kb on + strand at 5092.188 kb on + strand at 5092.189 kb on - strand at 5092.519 kb on + strand, within PS417_23535 at 5092.519 kb on + strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand at 5092.520 kb on - strand, within PS417_23535 at 5092.550 kb on - strand, within PS417_23535 at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.745 kb on + strand at 5092.746 kb on - strand at 5092.854 kb on + strand, within PS417_23540 at 5092.854 kb on + strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,089,981 - PS417_23525 0.24 +0.0 5,089,981 - PS417_23525 0.24 -0.6 5,090,080 - PS417_23525 0.32 +3.0 5,090,080 - PS417_23525 0.32 -1.7 5,090,127 + PS417_23525 0.36 -1.8 5,090,128 - PS417_23525 0.36 -0.4 5,090,145 - PS417_23525 0.37 -0.3 5,090,300 - PS417_23525 0.50 +1.4 5,090,326 - PS417_23525 0.52 -2.8 5,090,326 - PS417_23525 0.52 +0.9 5,090,397 + PS417_23525 0.58 -1.5 5,090,642 + PS417_23525 0.79 +0.1 5,090,643 - PS417_23525 0.79 -1.1 5,090,656 - PS417_23525 0.80 -1.7 5,090,665 + PS417_23525 0.81 +0.8 5,090,666 - PS417_23525 0.81 +0.1 5,090,666 - PS417_23525 0.81 +1.1 5,090,867 + +1.8 5,090,867 + -1.2 5,090,868 - +0.7 5,090,971 + -0.0 5,091,278 + PS417_23530 0.37 -1.7 5,091,278 + PS417_23530 0.37 -2.4 5,091,278 + PS417_23530 0.37 -1.0 5,091,278 + PS417_23530 0.37 -0.5 5,091,279 - PS417_23530 0.37 -1.4 5,091,279 - PS417_23530 0.37 -0.4 5,091,449 + PS417_23530 0.53 -0.2 5,091,603 - PS417_23530 0.67 -2.5 5,091,694 + PS417_23530 0.75 +0.6 5,091,842 + PS417_23530 0.88 -0.7 5,092,038 + +0.9 5,092,039 - +0.3 5,092,140 + +0.8 5,092,176 + -1.6 5,092,176 + -0.3 5,092,188 + -0.4 5,092,188 + -1.7 5,092,189 - +0.3 5,092,519 + PS417_23535 0.68 -0.5 5,092,519 + PS417_23535 0.68 -0.0 5,092,520 - PS417_23535 0.68 +0.6 5,092,520 - PS417_23535 0.68 +0.2 5,092,520 - -0.3 5,092,520 - PS417_23535 0.68 +0.9 5,092,550 - PS417_23535 0.74 -0.8 5,092,722 + +1.1 5,092,722 + +0.5 5,092,722 + -3.0 5,092,745 + +1.3 5,092,746 - -0.7 5,092,854 + PS417_23540 0.17 +1.9 5,092,854 + PS417_23540 0.17 +0.7 5,092,855 - PS417_23540 0.17 +1.0 5,092,855 - PS417_23540 0.17 +0.2 5,092,857 - PS417_23540 0.18 -0.0 5,092,857 - PS417_23540 0.18 -0.3
Or see this region's nucleotide sequence