Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23450 and PS417_23455 overlap by 11 nucleotides PS417_23455 and PS417_23460 are separated by 98 nucleotides PS417_23460 and PS417_23465 overlap by 20 nucleotides PS417_23465 and PS417_23470 are separated by 137 nucleotides
PS417_23450: PS417_23450 - membrane protein, at 5,079,591 to 5,080,277
_23450
PS417_23455: PS417_23455 - LrgA, at 5,080,267 to 5,080,638
_23455
PS417_23460: PS417_23460 - LysR family transcriptional regulator, at 5,080,737 to 5,081,633
_23460
PS417_23465: PS417_23465 - flavodoxin, at 5,081,614 to 5,082,069
_23465
PS417_23470: PS417_23470 - histidine kinase, at 5,082,207 to 5,082,674
_23470
Position (kb) 5080
5081
5082 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5080.109 kb on - strand, within PS417_23450 at 5080.152 kb on + strand, within PS417_23450 at 5080.153 kb on - strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.223 kb on + strand at 5080.223 kb on + strand at 5080.223 kb on + strand at 5080.225 kb on + strand at 5080.225 kb on + strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.282 kb on + strand at 5080.283 kb on - strand at 5080.397 kb on + strand, within PS417_23455 at 5080.397 kb on + strand, within PS417_23455 at 5080.398 kb on - strand, within PS417_23455 at 5080.586 kb on + strand, within PS417_23455 at 5080.586 kb on + strand, within PS417_23455 at 5080.989 kb on - strand, within PS417_23460 at 5080.989 kb on - strand, within PS417_23460 at 5081.313 kb on + strand, within PS417_23460 at 5081.563 kb on - strand at 5081.773 kb on - strand, within PS417_23465 at 5081.780 kb on + strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.858 kb on + strand, within PS417_23465 at 5081.858 kb on + strand at 5081.859 kb on - strand, within PS417_23465 at 5081.941 kb on + strand, within PS417_23465 at 5081.941 kb on + strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5082.039 kb on - strand at 5082.105 kb on - strand at 5082.127 kb on - strand at 5082.212 kb on + strand at 5082.213 kb on - strand at 5082.300 kb on + strand, within PS417_23470 at 5082.300 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.514 kb on - strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 5,080,109 - PS417_23450 0.75 -1.8 5,080,152 + PS417_23450 0.82 +0.2 5,080,153 - PS417_23450 0.82 -3.0 5,080,182 + PS417_23450 0.86 +0.1 5,080,182 + PS417_23450 0.86 -0.3 5,080,182 + PS417_23450 0.86 -0.3 5,080,183 - PS417_23450 0.86 +0.7 5,080,183 - PS417_23450 0.86 -0.1 5,080,183 - PS417_23450 0.86 -2.2 5,080,223 + +2.0 5,080,223 + +1.5 5,080,223 + -1.9 5,080,225 + +0.0 5,080,225 + +1.1 5,080,226 - -1.0 5,080,226 - -1.5 5,080,226 - -1.8 5,080,226 - -3.2 5,080,226 - -2.4 5,080,226 - +0.9 5,080,282 + -0.3 5,080,283 - +0.7 5,080,397 + PS417_23455 0.35 +2.1 5,080,397 + PS417_23455 0.35 +0.7 5,080,398 - PS417_23455 0.35 -0.4 5,080,586 + PS417_23455 0.86 +2.7 5,080,586 + PS417_23455 0.86 +0.7 5,080,989 - PS417_23460 0.28 -1.7 5,080,989 - PS417_23460 0.28 +0.9 5,081,313 + PS417_23460 0.64 +1.2 5,081,563 - +1.9 5,081,773 - PS417_23465 0.35 -0.4 5,081,780 + PS417_23465 0.36 +1.4 5,081,781 - PS417_23465 0.37 +1.7 5,081,781 - PS417_23465 0.37 +0.6 5,081,781 - PS417_23465 0.37 -0.2 5,081,858 + PS417_23465 0.54 -2.1 5,081,858 + +2.3 5,081,859 - PS417_23465 0.54 +1.2 5,081,941 + PS417_23465 0.72 -0.7 5,081,941 + PS417_23465 0.72 +0.7 5,081,942 - PS417_23465 0.72 -1.9 5,081,942 - PS417_23465 0.72 -1.6 5,081,942 - PS417_23465 0.72 -0.6 5,082,039 - +0.6 5,082,105 - +0.7 5,082,127 - +0.3 5,082,212 + -0.9 5,082,213 - -0.1 5,082,300 + PS417_23470 0.20 -0.6 5,082,300 + PS417_23470 0.20 -2.5 5,082,513 + PS417_23470 0.65 +2.0 5,082,513 + PS417_23470 0.65 +0.1 5,082,513 + PS417_23470 0.65 +1.7 5,082,514 - PS417_23470 0.66 -0.2 5,082,537 + PS417_23470 0.71 +0.9 5,082,537 + PS417_23470 0.71 -1.1 5,082,537 + PS417_23470 0.71 +1.1 5,082,537 + PS417_23470 0.71 +0.5
Or see this region's nucleotide sequence