Strain Fitness in Pseudomonas simiae WCS417 around PS417_23145

Experiment: methylglyoxal 0.032 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_23140 and PS417_23145 are separated by 21 nucleotidesPS417_23145 and PS417_23150 are separated by 2 nucleotidesPS417_23150 and PS417_23155 overlap by 1 nucleotides PS417_23140: PS417_23140 - histidinol dehydrogenase, at 5,016,094 to 5,017,383 _23140 PS417_23145: PS417_23145 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 5,017,405 to 5,018,514 _23145 PS417_23150: PS417_23150 - Cro/Cl family transcriptional regulator, at 5,018,517 to 5,019,500 _23150 PS417_23155: PS417_23155 - pilus assembly protein PilW, at 5,019,500 to 5,020,258 _23155 Position (kb) 5017 5018 5019Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5018.588 kb on - strandat 5018.658 kb on - strand, within PS417_23150at 5018.658 kb on - strand, within PS417_23150at 5018.746 kb on - strand, within PS417_23150at 5018.793 kb on - strand, within PS417_23150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
remove
5,018,588 - -1.1
5,018,658 - PS417_23150 0.14 -2.9
5,018,658 - PS417_23150 0.14 +0.9
5,018,746 - PS417_23150 0.23 +1.9
5,018,793 - PS417_23150 0.28 +0.7

Or see this region's nucleotide sequence