Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22900 and PS417_22905 are separated by 82 nucleotides PS417_22905 and PS417_22910 are separated by 45 nucleotides PS417_22910 and PS417_22915 are separated by 2 nucleotides PS417_22915 and PS417_22920 are separated by 5 nucleotides
PS417_22900: PS417_22900 - cytochrome C oxidase subunit II, at 4,963,194 to 4,963,607
_22900
PS417_22905: PS417_22905 - 50S ribosomal protein L19, at 4,963,690 to 4,964,040
_22905
PS417_22910: PS417_22910 - tRNA (guanine-N1)-methyltransferase, at 4,964,086 to 4,964,838
_22910
PS417_22915: PS417_22915 - 16S rRNA processing protein RimM, at 4,964,841 to 4,965,377
_22915
PS417_22920: PS417_22920 - 30S ribosomal protein S16, at 4,965,383 to 4,965,634
_22920
Position (kb)
4964
4965 Strain fitness (log2 ratio)
-2
-1
0
1 at 4963.311 kb on + strand, within PS417_22900 at 4963.311 kb on + strand, within PS417_22900 at 4963.311 kb on + strand, within PS417_22900 at 4963.611 kb on + strand at 4963.611 kb on + strand at 4963.611 kb on + strand at 4963.611 kb on + strand at 4963.611 kb on + strand at 4963.611 kb on + strand at 4963.612 kb on - strand at 4963.612 kb on - strand at 4963.615 kb on + strand at 4963.615 kb on + strand at 4963.615 kb on + strand at 4963.625 kb on + strand at 4963.626 kb on - strand at 4964.057 kb on - strand at 4964.057 kb on - strand at 4964.071 kb on - strand at 4964.843 kb on - strand at 4965.778 kb on - strand at 4965.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 4,963,311 + PS417_22900 0.28 +0.7 4,963,311 + PS417_22900 0.28 +0.7 4,963,311 + PS417_22900 0.28 +0.8 4,963,611 + -0.3 4,963,611 + -0.7 4,963,611 + +0.4 4,963,611 + -1.9 4,963,611 + +1.0 4,963,611 + -1.1 4,963,612 - -2.2 4,963,612 - +0.5 4,963,615 + +0.8 4,963,615 + -0.8 4,963,615 + +0.8 4,963,625 + +0.1 4,963,626 - +0.1 4,964,057 - -1.9 4,964,057 - -1.9 4,964,071 - -0.5 4,964,843 - -0.5 4,965,778 - +0.6 4,965,780 - -0.3
Or see this region's nucleotide sequence