Strain Fitness in Pseudomonas simiae WCS417 around PS417_22185
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
---|---|---|---|---|---|
remove | |||||
4,804,414 | + | +6.8 | |||
4,805,116 | - | +0.7 | |||
4,805,415 | + | PS417_22185 | 0.85 | +1.2 | |
4,805,483 | + | +0.9 | |||
4,805,484 | - | -1.8 | |||
4,805,522 | - | -0.9 | |||
4,805,614 | - | -0.6 | |||
4,805,761 | + | -2.0 | |||
4,806,056 | - | PS417_22190 | 0.20 | +0.1 | |
4,806,094 | + | PS417_22190 | 0.22 | -0.5 | |
4,806,094 | + | PS417_22190 | 0.22 | +2.1 | |
4,806,094 | + | PS417_22190 | 0.22 | -1.8 | |
4,806,095 | - | PS417_22190 | 0.22 | -2.4 | |
4,806,175 | + | PS417_22190 | 0.26 | +0.0 | |
4,806,175 | + | PS417_22190 | 0.26 | +1.1 | |
4,806,175 | + | PS417_22190 | 0.26 | -1.6 | |
4,806,176 | - | PS417_22190 | 0.26 | -3.4 | |
4,806,185 | - | PS417_22190 | 0.26 | +0.9 | |
4,806,264 | + | PS417_22190 | 0.30 | -0.8 | |
4,806,264 | + | PS417_22190 | 0.30 | -0.4 | |
4,806,264 | + | PS417_22190 | 0.30 | -0.6 | |
4,806,265 | - | PS417_22190 | 0.30 | +0.3 | |
4,806,265 | - | PS417_22190 | 0.30 | -1.4 | |
4,806,354 | + | PS417_22190 | 0.34 | +1.5 |
Or see this region's nucleotide sequence