Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20180 and PS417_20185 overlap by 1 nucleotides PS417_20185 and PS417_20190 are separated by 21 nucleotides
PS417_20180: PS417_20180 - agmatinase, at 4,384,795 to 4,385,745
_20180
PS417_20185: PS417_20185 - ketosteroid isomerase, at 4,385,745 to 4,386,167
_20185
PS417_20190: PS417_20190 - nitrate reductase, at 4,386,189 to 4,387,700
_20190
Position (kb) 4385
4386
4387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4385.005 kb on + strand, within PS417_20180 at 4385.005 kb on + strand, within PS417_20180 at 4385.077 kb on - strand, within PS417_20180 at 4385.265 kb on + strand, within PS417_20180 at 4385.265 kb on + strand, within PS417_20180 at 4385.266 kb on - strand, within PS417_20180 at 4385.266 kb on - strand, within PS417_20180 at 4385.312 kb on + strand, within PS417_20180 at 4385.372 kb on - strand, within PS417_20180 at 4385.501 kb on - strand, within PS417_20180 at 4385.501 kb on - strand, within PS417_20180 at 4385.501 kb on - strand, within PS417_20180 at 4385.856 kb on + strand, within PS417_20185 at 4385.856 kb on + strand, within PS417_20185 at 4385.857 kb on - strand, within PS417_20185 at 4385.893 kb on - strand, within PS417_20185 at 4386.194 kb on + strand at 4386.194 kb on + strand at 4386.197 kb on + strand at 4386.198 kb on - strand at 4386.209 kb on + strand at 4386.209 kb on + strand at 4386.209 kb on + strand at 4386.210 kb on - strand at 4386.216 kb on - strand at 4386.227 kb on - strand at 4386.267 kb on - strand at 4386.314 kb on + strand at 4386.401 kb on - strand, within PS417_20190 at 4386.401 kb on - strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.904 kb on - strand, within PS417_20190 at 4386.928 kb on + strand, within PS417_20190 at 4387.029 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.136 kb on + strand, within PS417_20190 at 4387.137 kb on - strand, within PS417_20190 at 4387.147 kb on - strand, within PS417_20190
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 4,385,005 + PS417_20180 0.22 -1.0 4,385,005 + PS417_20180 0.22 +0.2 4,385,077 - PS417_20180 0.30 -0.3 4,385,265 + PS417_20180 0.49 -0.9 4,385,265 + PS417_20180 0.49 +3.2 4,385,266 - PS417_20180 0.50 -0.4 4,385,266 - PS417_20180 0.50 -0.8 4,385,312 + PS417_20180 0.54 +0.4 4,385,372 - PS417_20180 0.61 -2.3 4,385,501 - PS417_20180 0.74 -0.7 4,385,501 - PS417_20180 0.74 -1.1 4,385,501 - PS417_20180 0.74 -1.9 4,385,856 + PS417_20185 0.26 -0.3 4,385,856 + PS417_20185 0.26 -0.5 4,385,857 - PS417_20185 0.26 -1.2 4,385,893 - PS417_20185 0.35 -0.5 4,386,194 + +0.8 4,386,194 + -2.6 4,386,197 + -1.7 4,386,198 - +0.3 4,386,209 + +0.7 4,386,209 + -0.1 4,386,209 + +0.0 4,386,210 - -1.6 4,386,216 - +0.4 4,386,227 - -0.0 4,386,267 - +0.3 4,386,314 + -2.3 4,386,401 - PS417_20190 0.14 +0.6 4,386,401 - PS417_20190 0.14 +2.8 4,386,903 + PS417_20190 0.47 +0.4 4,386,903 + PS417_20190 0.47 -0.7 4,386,903 + PS417_20190 0.47 -2.8 4,386,904 - PS417_20190 0.47 +1.6 4,386,928 + PS417_20190 0.49 -1.4 4,387,029 + PS417_20190 0.56 -0.6 4,387,047 + PS417_20190 0.57 -2.9 4,387,047 + PS417_20190 0.57 +0.5 4,387,047 + PS417_20190 0.57 -1.1 4,387,047 + PS417_20190 0.57 +2.1 4,387,047 + PS417_20190 0.57 -0.8 4,387,048 - PS417_20190 0.57 +0.9 4,387,048 - PS417_20190 0.57 +1.0 4,387,048 - PS417_20190 0.57 -0.7 4,387,048 - PS417_20190 0.57 +0.2 4,387,136 + PS417_20190 0.63 +0.8 4,387,137 - PS417_20190 0.63 -0.3 4,387,147 - PS417_20190 0.63 +0.9
Or see this region's nucleotide sequence