Strain Fitness in Pseudomonas simiae WCS417 around PS417_19775

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19765 and PS417_19770 are separated by 139 nucleotidesPS417_19770 and PS417_19775 are separated by 30 nucleotidesPS417_19775 and PS417_19780 overlap by 4 nucleotidesPS417_19780 and PS417_19785 are separated by 65 nucleotidesPS417_19785 and PS417_19790 are separated by 3 nucleotides PS417_19765: PS417_19765 - flagellar hook-length control protein, at 4,291,940 to 4,293,271 _19765 PS417_19770: PS417_19770 - histidine kinase, at 4,293,411 to 4,293,755 _19770 PS417_19775: PS417_19775 - chemotaxis protein CheY, at 4,293,786 to 4,295,504 _19775 PS417_19780: PS417_19780 - anti-anti-sigma factor, at 4,295,501 to 4,295,806 _19780 PS417_19785: PS417_19785 - flagellar biogenesis protein, at 4,295,872 to 4,296,321 _19785 PS417_19790: PS417_19790 - ATP synthase, at 4,296,325 to 4,297,683 _19790 Position (kb) 4293 4294 4295 4296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4293.271 kb on + strandat 4293.271 kb on + strandat 4293.272 kb on - strandat 4293.275 kb on + strandat 4293.275 kb on + strandat 4293.275 kb on + strandat 4293.275 kb on + strandat 4293.276 kb on - strandat 4293.276 kb on - strandat 4293.276 kb on - strandat 4293.321 kb on - strandat 4293.348 kb on - strandat 4293.362 kb on + strandat 4293.389 kb on - strandat 4293.744 kb on + strandat 4293.744 kb on + strandat 4293.825 kb on - strandat 4293.825 kb on - strandat 4293.847 kb on - strandat 4293.867 kb on + strandat 4294.014 kb on + strand, within PS417_19775at 4294.014 kb on + strand, within PS417_19775at 4294.014 kb on + strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.019 kb on - strand, within PS417_19775at 4294.019 kb on - strand, within PS417_19775at 4294.064 kb on - strand, within PS417_19775at 4294.231 kb on + strand, within PS417_19775at 4294.232 kb on - strand, within PS417_19775at 4294.306 kb on + strand, within PS417_19775at 4294.307 kb on - strand, within PS417_19775at 4294.307 kb on - strand, within PS417_19775at 4294.566 kb on - strand, within PS417_19775at 4294.801 kb on + strand, within PS417_19775at 4294.801 kb on + strand, within PS417_19775at 4294.822 kb on + strand, within PS417_19775at 4294.822 kb on + strand, within PS417_19775at 4294.823 kb on - strand, within PS417_19775at 4294.823 kb on - strand, within PS417_19775at 4294.823 kb on - strand, within PS417_19775at 4294.901 kb on + strand, within PS417_19775at 4294.901 kb on + strand, within PS417_19775at 4294.902 kb on - strand, within PS417_19775at 4294.902 kb on - strand, within PS417_19775at 4294.994 kb on + strand, within PS417_19775at 4294.995 kb on - strand, within PS417_19775at 4295.056 kb on + strand, within PS417_19775at 4295.056 kb on + strand, within PS417_19775at 4295.162 kb on - strand, within PS417_19775at 4295.395 kb on - strandat 4295.566 kb on + strand, within PS417_19780at 4295.649 kb on + strand, within PS417_19780at 4295.649 kb on + strand, within PS417_19780at 4295.649 kb on + strand, within PS417_19780at 4295.650 kb on - strand, within PS417_19780at 4295.650 kb on - strand, within PS417_19780at 4295.650 kb on - strand, within PS417_19780at 4295.650 kb on - strand, within PS417_19780at 4295.650 kb on - strand, within PS417_19780at 4295.650 kb on - strand, within PS417_19780at 4295.677 kb on - strand, within PS417_19780at 4295.694 kb on + strand, within PS417_19780at 4295.707 kb on - strand, within PS417_19780at 4295.845 kb on - strandat 4295.871 kb on - strandat 4295.871 kb on - strandat 4295.876 kb on + strandat 4295.876 kb on + strandat 4295.877 kb on - strandat 4295.964 kb on - strand, within PS417_19785at 4295.964 kb on - strand, within PS417_19785at 4296.170 kb on + strand, within PS417_19785at 4296.237 kb on - strand, within PS417_19785at 4296.414 kb on - strandat 4296.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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4,293,271 + -0.0
4,293,271 + -1.4
4,293,272 - -1.4
4,293,275 + -1.7
4,293,275 + +1.9
4,293,275 + -1.4
4,293,275 + -2.3
4,293,276 - -1.1
4,293,276 - -2.8
4,293,276 - -0.6
4,293,321 - +0.6
4,293,348 - -3.2
4,293,362 + +1.7
4,293,389 - -1.4
4,293,744 + -3.3
4,293,744 + -1.4
4,293,825 - +0.9
4,293,825 - -0.9
4,293,847 - +2.7
4,293,867 + +0.9
4,294,014 + PS417_19775 0.13 -3.2
4,294,014 + PS417_19775 0.13 -0.2
4,294,014 + PS417_19775 0.13 +0.2
4,294,015 - PS417_19775 0.13 -3.3
4,294,015 - PS417_19775 0.13 +2.7
4,294,015 - PS417_19775 0.13 +1.7
4,294,015 - PS417_19775 0.13 -0.5
4,294,015 - PS417_19775 0.13 +0.6
4,294,015 - PS417_19775 0.13 +0.7
4,294,016 + PS417_19775 0.13 -0.2
4,294,016 + PS417_19775 0.13 +1.6
4,294,016 + PS417_19775 0.13 +0.3
4,294,016 + PS417_19775 0.13 +1.4
4,294,016 + PS417_19775 0.13 -1.5
4,294,016 + PS417_19775 0.13 +0.9
4,294,017 - PS417_19775 0.13 +1.0
4,294,017 - PS417_19775 0.13 +2.3
4,294,017 - PS417_19775 0.13 -0.4
4,294,017 - PS417_19775 0.13 +0.6
4,294,019 - PS417_19775 0.14 -2.4
4,294,019 - PS417_19775 0.14 +0.9
4,294,064 - PS417_19775 0.16 +0.8
4,294,231 + PS417_19775 0.26 -0.0
4,294,232 - PS417_19775 0.26 +0.1
4,294,306 + PS417_19775 0.30 -0.2
4,294,307 - PS417_19775 0.30 +0.5
4,294,307 - PS417_19775 0.30 +0.2
4,294,566 - PS417_19775 0.45 +0.1
4,294,801 + PS417_19775 0.59 +0.4
4,294,801 + PS417_19775 0.59 -1.5
4,294,822 + PS417_19775 0.60 +1.0
4,294,822 + PS417_19775 0.60 +1.6
4,294,823 - PS417_19775 0.60 +1.2
4,294,823 - PS417_19775 0.60 +0.3
4,294,823 - PS417_19775 0.60 -0.1
4,294,901 + PS417_19775 0.65 +0.9
4,294,901 + PS417_19775 0.65 +1.2
4,294,902 - PS417_19775 0.65 +2.4
4,294,902 - PS417_19775 0.65 +1.3
4,294,994 + PS417_19775 0.70 +0.5
4,294,995 - PS417_19775 0.70 +1.4
4,295,056 + PS417_19775 0.74 -1.6
4,295,056 + PS417_19775 0.74 -1.9
4,295,162 - PS417_19775 0.80 +1.2
4,295,395 - +0.5
4,295,566 + PS417_19780 0.21 -1.6
4,295,649 + PS417_19780 0.48 -1.9
4,295,649 + PS417_19780 0.48 +0.4
4,295,649 + PS417_19780 0.48 +0.0
4,295,650 - PS417_19780 0.49 +1.7
4,295,650 - PS417_19780 0.49 -0.7
4,295,650 - PS417_19780 0.49 +1.0
4,295,650 - PS417_19780 0.49 -2.8
4,295,650 - PS417_19780 0.49 -1.3
4,295,650 - PS417_19780 0.49 +0.1
4,295,677 - PS417_19780 0.58 -1.0
4,295,694 + PS417_19780 0.63 +0.4
4,295,707 - PS417_19780 0.67 +0.5
4,295,845 - -0.5
4,295,871 - -3.1
4,295,871 - -1.9
4,295,876 + -0.7
4,295,876 + -0.2
4,295,877 - +0.0
4,295,964 - PS417_19785 0.20 +0.1
4,295,964 - PS417_19785 0.20 -0.7
4,296,170 + PS417_19785 0.66 +0.2
4,296,237 - PS417_19785 0.81 -0.7
4,296,414 - +0.2
4,296,414 - +0.1

Or see this region's nucleotide sequence