Strain Fitness in Pseudomonas simiae WCS417 around PS417_19520

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19515 and PS417_19520 overlap by 4 nucleotidesPS417_19520 and PS417_19525 are separated by 161 nucleotides PS417_19515: PS417_19515 - histidine kinase, at 4,231,091 to 4,232,413 _19515 PS417_19520: PS417_19520 - transcriptional regulator, at 4,232,410 to 4,233,090 _19520 PS417_19525: PS417_19525 - thiol:disulfide interchange protein, at 4,233,252 to 4,234,979 _19525 Position (kb) 4232 4233 4234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4231.556 kb on + strand, within PS417_19515at 4232.556 kb on - strand, within PS417_19520at 4232.798 kb on + strand, within PS417_19520at 4232.799 kb on - strand, within PS417_19520at 4233.082 kb on + strandat 4233.104 kb on + strandat 4233.105 kb on - strandat 4233.175 kb on + strandat 4233.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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4,231,556 + PS417_19515 0.35 +0.7
4,232,556 - PS417_19520 0.21 -1.0
4,232,798 + PS417_19520 0.57 -1.4
4,232,799 - PS417_19520 0.57 -0.4
4,233,082 + -3.5
4,233,104 + -2.9
4,233,105 - +3.9
4,233,175 + +2.3
4,233,180 + -0.8

Or see this region's nucleotide sequence