Strain Fitness in Pseudomonas simiae WCS417 around PS417_01895

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01885 and PS417_01890 are separated by 78 nucleotidesPS417_01890 and PS417_01895 are separated by 27 nucleotidesPS417_01895 and PS417_01900 are separated by 88 nucleotides PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726 _01885 PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425 _01890 PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135 _01895 PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069 _01900 Position (kb) 418 419 420 421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 417.621 kb on + strand, within PS417_01885at 417.622 kb on - strand, within PS417_01885at 417.806 kb on + strandat 417.807 kb on - strandat 417.824 kb on + strandat 417.825 kb on - strandat 417.868 kb on + strand, within PS417_01890at 417.868 kb on + strand, within PS417_01890at 417.868 kb on + strand, within PS417_01890at 417.899 kb on + strand, within PS417_01890at 417.900 kb on - strand, within PS417_01890at 417.914 kb on - strand, within PS417_01890at 418.152 kb on - strand, within PS417_01890at 418.193 kb on + strand, within PS417_01890at 418.194 kb on - strand, within PS417_01890at 418.194 kb on - strand, within PS417_01890at 418.277 kb on - strand, within PS417_01890at 418.304 kb on + strand, within PS417_01890at 418.304 kb on + strand, within PS417_01890at 418.307 kb on + strand, within PS417_01890at 418.436 kb on + strandat 418.436 kb on + strandat 418.437 kb on - strandat 418.437 kb on - strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.469 kb on + strandat 418.470 kb on - strandat 418.470 kb on - strandat 418.470 kb on - strandat 418.610 kb on + strandat 418.611 kb on - strandat 418.652 kb on + strand, within PS417_01895at 418.652 kb on + strand, within PS417_01895at 418.652 kb on + strand, within PS417_01895at 418.754 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.985 kb on + strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 418.986 kb on - strand, within PS417_01895at 419.162 kb on - strand, within PS417_01895at 419.327 kb on + strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.356 kb on + strandat 419.356 kb on + strand, within PS417_01895at 419.448 kb on + strand, within PS417_01895at 419.448 kb on + strand, within PS417_01895at 419.448 kb on + strand, within PS417_01895at 419.450 kb on + strand, within PS417_01895at 419.451 kb on - strand, within PS417_01895at 419.451 kb on - strand, within PS417_01895at 419.453 kb on + strand, within PS417_01895at 419.454 kb on - strand, within PS417_01895at 419.454 kb on - strand, within PS417_01895at 419.454 kb on - strand, within PS417_01895at 419.495 kb on + strand, within PS417_01895at 419.519 kb on + strand, within PS417_01895at 419.519 kb on + strand, within PS417_01895at 419.520 kb on - strand, within PS417_01895at 419.846 kb on + strand, within PS417_01895at 419.846 kb on + strand, within PS417_01895at 419.847 kb on - strand, within PS417_01895at 420.188 kb on + strandat 420.225 kb on + strandat 420.259 kb on + strandat 420.260 kb on - strandat 420.499 kb on - strand, within PS417_01900at 420.622 kb on - strand, within PS417_01900at 420.673 kb on + strand, within PS417_01900at 420.793 kb on - strand, within PS417_01900at 420.802 kb on - strand, within PS417_01900at 421.046 kb on - strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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417,621 + PS417_01885 0.89 -0.9
417,622 - PS417_01885 0.89 -0.5
417,806 + +0.9
417,807 - -0.3
417,824 + -2.4
417,825 - -0.7
417,868 + PS417_01890 0.10 -1.3
417,868 + PS417_01890 0.10 +0.5
417,868 + PS417_01890 0.10 +0.5
417,899 + PS417_01890 0.15 +0.8
417,900 - PS417_01890 0.15 +0.8
417,914 - PS417_01890 0.18 -1.1
418,152 - PS417_01890 0.56 +0.7
418,193 + PS417_01890 0.62 +1.9
418,194 - PS417_01890 0.63 -2.5
418,194 - PS417_01890 0.63 -0.5
418,277 - PS417_01890 0.76 -1.0
418,304 + PS417_01890 0.80 +1.3
418,304 + PS417_01890 0.80 -1.9
418,307 + PS417_01890 0.81 +2.2
418,436 + +1.5
418,436 + -1.5
418,437 - +0.7
418,437 - +0.1
418,469 + +1.5
418,469 + +0.7
418,469 + -2.5
418,469 + +2.2
418,469 + -0.1
418,469 + -1.7
418,469 + +1.8
418,469 + -3.3
418,469 + -1.7
418,470 - +0.5
418,470 - +0.3
418,470 - +0.7
418,610 + +1.3
418,611 - -3.9
418,652 + PS417_01895 0.12 +0.1
418,652 + PS417_01895 0.12 -1.4
418,652 + PS417_01895 0.12 -0.7
418,754 + PS417_01895 0.18 -1.1
418,985 + PS417_01895 0.32 -0.9
418,985 + PS417_01895 0.32 +0.4
418,985 + PS417_01895 0.32 -2.5
418,985 + PS417_01895 0.32 -1.3
418,985 + PS417_01895 0.32 +0.9
418,986 - PS417_01895 0.32 +3.5
418,986 - PS417_01895 0.32 +4.5
418,986 - PS417_01895 0.32 -0.5
418,986 - PS417_01895 0.32 +2.1
419,162 - PS417_01895 0.42 -1.5
419,327 + PS417_01895 0.52 +0.6
419,328 - PS417_01895 0.52 -2.4
419,328 - PS417_01895 0.52 -0.9
419,328 - PS417_01895 0.52 +3.0
419,328 - PS417_01895 0.52 +1.8
419,356 + +2.5
419,356 + PS417_01895 0.54 -0.2
419,448 + PS417_01895 0.59 +0.5
419,448 + PS417_01895 0.59 -1.5
419,448 + PS417_01895 0.59 +0.9
419,450 + PS417_01895 0.59 +0.9
419,451 - PS417_01895 0.59 +0.8
419,451 - PS417_01895 0.59 -1.3
419,453 + PS417_01895 0.59 -1.9
419,454 - PS417_01895 0.59 -1.1
419,454 - PS417_01895 0.59 -0.0
419,454 - PS417_01895 0.59 -0.5
419,495 + PS417_01895 0.62 +1.6
419,519 + PS417_01895 0.63 +0.2
419,519 + PS417_01895 0.63 +1.9
419,520 - PS417_01895 0.63 +1.3
419,846 + PS417_01895 0.83 +0.6
419,846 + PS417_01895 0.83 +0.6
419,847 - PS417_01895 0.83 +0.5
420,188 + -0.1
420,225 + +0.3
420,259 + -1.1
420,260 - -1.2
420,499 - PS417_01900 0.33 +0.9
420,622 - PS417_01900 0.47 -1.0
420,673 + PS417_01900 0.53 -0.0
420,793 - PS417_01900 0.67 -0.1
420,802 - PS417_01900 0.68 -1.5
421,046 - +0.1
421,094 + -1.6
421,094 + +1.0
421,094 + -2.7
421,094 + -0.3
421,095 - +0.3
421,095 - +0.3
421,095 - +0.8
421,095 - +3.7
421,095 - +0.3
421,095 - +1.3
421,095 - +1.0

Or see this region's nucleotide sequence