Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17770 and PS417_17775 are separated by 1 nucleotides PS417_17775 and PS417_17780 are separated by 276 nucleotides PS417_17780 and PS417_17785 are separated by 174 nucleotides
PS417_17770: PS417_17770 - ABC transporter permease, at 3,878,340 to 3,880,802
_17770
PS417_17775: PS417_17775 - ABC transporter ATP-binding protein, at 3,880,804 to 3,881,472
_17775
PS417_17780: PS417_17780 - Ais protein, at 3,881,749 to 3,882,423
_17780
PS417_17785: PS417_17785 - 4-amino-4-deoxy-L-arabinose transferase, at 3,882,598 to 3,884,253
_17785
Position (kb)
3881
3882
3883 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3881.441 kb on + strand at 3881.441 kb on + strand at 3881.442 kb on - strand at 3881.701 kb on + strand at 3881.702 kb on - strand at 3881.720 kb on + strand at 3881.724 kb on + strand at 3881.724 kb on + strand at 3881.725 kb on - strand at 3881.725 kb on - strand at 3881.727 kb on + strand at 3882.140 kb on + strand, within PS417_17780 at 3882.141 kb on - strand, within PS417_17780 at 3882.410 kb on + strand at 3882.421 kb on + strand at 3882.476 kb on + strand at 3882.477 kb on - strand at 3882.477 kb on - strand at 3882.489 kb on + strand at 3882.490 kb on - strand at 3882.494 kb on - strand at 3882.508 kb on + strand at 3882.509 kb on - strand at 3882.509 kb on - strand at 3882.555 kb on + strand at 3882.556 kb on - strand at 3882.575 kb on - strand at 3882.626 kb on + strand at 3882.626 kb on + strand at 3882.627 kb on - strand at 3882.627 kb on - strand at 3883.177 kb on + strand at 3883.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 3,881,441 + -3.0 3,881,441 + -0.6 3,881,442 - +1.7 3,881,701 + -4.4 3,881,702 - -2.2 3,881,720 + -3.2 3,881,724 + -0.7 3,881,724 + -1.1 3,881,725 - -0.4 3,881,725 - -0.7 3,881,727 + +0.3 3,882,140 + PS417_17780 0.58 -1.5 3,882,141 - PS417_17780 0.58 +1.5 3,882,410 + -0.3 3,882,421 + +0.2 3,882,476 + +1.7 3,882,477 - +1.6 3,882,477 - -2.0 3,882,489 + +0.6 3,882,490 - -0.9 3,882,494 - -0.2 3,882,508 + -3.2 3,882,509 - +1.4 3,882,509 - +2.8 3,882,555 + +1.3 3,882,556 - +0.4 3,882,575 - -1.5 3,882,626 + -0.6 3,882,626 + +0.9 3,882,627 - -0.4 3,882,627 - -3.0 3,883,177 + -1.7 3,883,178 - -0.2
Or see this region's nucleotide sequence