Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17545 and PS417_17550 are separated by 1 nucleotides PS417_17550 and PS417_17555 are separated by 0 nucleotides
PS417_17545: PS417_17545 - 2-oxoisovalerate dehydrogenase, at 3,831,243 to 3,832,478
_17545
PS417_17550: PS417_17550 - branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) , at 3,832,480 to 3,833,538
_17550
PS417_17555: PS417_17555 - branched-chain alpha-keto acid dehydrogenase subunit E2, at 3,833,539 to 3,834,798
_17555
Position (kb)
3832
3833
3834 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3831.561 kb on + strand, within PS417_17545 at 3831.643 kb on - strand, within PS417_17545 at 3831.754 kb on - strand, within PS417_17545 at 3831.812 kb on - strand, within PS417_17545 at 3831.934 kb on + strand, within PS417_17545 at 3832.206 kb on + strand, within PS417_17545 at 3832.780 kb on + strand, within PS417_17550 at 3832.780 kb on + strand, within PS417_17550 at 3832.895 kb on - strand, within PS417_17550 at 3833.137 kb on + strand at 3833.138 kb on - strand, within PS417_17550 at 3833.215 kb on + strand, within PS417_17550 at 3833.215 kb on + strand at 3833.215 kb on + strand, within PS417_17550 at 3833.483 kb on - strand at 3834.194 kb on + strand, within PS417_17555
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 3,831,561 + PS417_17545 0.26 -2.4 3,831,643 - PS417_17545 0.32 +2.2 3,831,754 - PS417_17545 0.41 -2.9 3,831,812 - PS417_17545 0.46 -1.1 3,831,934 + PS417_17545 0.56 +1.9 3,832,206 + PS417_17545 0.78 +2.1 3,832,780 + PS417_17550 0.28 +0.1 3,832,780 + PS417_17550 0.28 -1.0 3,832,895 - PS417_17550 0.39 -0.2 3,833,137 + -1.2 3,833,138 - PS417_17550 0.62 -3.4 3,833,215 + PS417_17550 0.69 -2.8 3,833,215 + +3.3 3,833,215 + PS417_17550 0.69 +0.4 3,833,483 - -0.2 3,834,194 + PS417_17555 0.52 -1.4
Or see this region's nucleotide sequence