Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01705 and PS417_01710 are separated by 108 nucleotides PS417_01710 and PS417_01715 overlap by 4 nucleotides PS417_01715 and PS417_01720 are separated by 405 nucleotides
PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) <small>(from data)</small>, at 377,544 to 378,908
_01705
PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766
_01710
PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323
_01715
PS417_01720: PS417_01720 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 380,729 to 382,399
_01720
Position (kb) 379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 378.852 kb on + strand at 378.853 kb on - strand at 378.853 kb on - strand at 378.934 kb on + strand at 378.934 kb on + strand at 378.940 kb on + strand at 378.941 kb on - strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.950 kb on + strand at 378.951 kb on - strand at 378.951 kb on - strand at 378.986 kb on + strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 379.080 kb on + strand at 379.081 kb on - strand at 379.081 kb on - strand at 379.346 kb on + strand, within PS417_01710 at 379.464 kb on - strand, within PS417_01710 at 379.516 kb on - strand, within PS417_01710 at 379.548 kb on + strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.796 kb on + strand at 379.797 kb on - strand at 379.800 kb on + strand at 379.801 kb on - strand at 379.937 kb on + strand, within PS417_01715 at 380.255 kb on - strand, within PS417_01715 at 380.372 kb on - strand at 380.372 kb on - strand at 380.550 kb on + strand at 380.567 kb on - strand at 380.648 kb on + strand at 380.659 kb on - strand at 380.659 kb on - strand at 380.740 kb on + strand at 380.741 kb on - strand at 380.883 kb on - strand at 381.113 kb on + strand, within PS417_01720 at 381.113 kb on + strand, within PS417_01720 at 381.113 kb on + strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.114 kb on - strand, within PS417_01720 at 381.143 kb on + strand, within PS417_01720 at 381.144 kb on - strand, within PS417_01720 at 381.176 kb on + strand, within PS417_01720 at 381.177 kb on - strand at 381.209 kb on + strand, within PS417_01720 at 381.209 kb on + strand, within PS417_01720 at 381.210 kb on - strand, within PS417_01720
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 378,852 + -2.6 378,853 - -0.2 378,853 - +0.5 378,934 + +0.4 378,934 + -1.3 378,940 + -0.6 378,941 - -0.2 378,942 + +0.7 378,942 + +0.2 378,943 - -4.5 378,943 - -2.9 378,944 + +0.2 378,944 + +0.5 378,944 + -1.7 378,944 + -0.9 378,945 - +0.0 378,945 - +1.2 378,945 - -0.7 378,945 - +0.3 378,948 + -0.4 378,948 + -2.0 378,948 + -0.2 378,948 + -0.8 378,949 - -2.7 378,949 - -0.5 378,949 - -1.2 378,950 + +1.2 378,951 - +2.4 378,951 - +0.2 378,986 + +0.2 378,987 - -2.4 378,987 - -2.1 378,987 - -1.4 378,987 - +0.5 379,080 + -1.9 379,081 - -0.7 379,081 - -0.6 379,346 + PS417_01710 0.44 -0.3 379,464 - PS417_01710 0.60 -0.8 379,516 - PS417_01710 0.67 -2.5 379,548 + PS417_01710 0.71 +0.0 379,549 - PS417_01710 0.71 -0.2 379,549 - PS417_01710 0.71 -2.6 379,796 + -1.1 379,797 - +0.6 379,800 + +0.6 379,801 - -0.7 379,937 + PS417_01715 0.31 -1.4 380,255 - PS417_01715 0.88 -0.1 380,372 - +0.5 380,372 - +2.4 380,550 + +2.5 380,567 - -3.9 380,648 + -3.7 380,659 - +0.6 380,659 - +0.5 380,740 + -0.1 380,741 - -2.1 380,883 - +0.5 381,113 + PS417_01720 0.23 +0.5 381,113 + PS417_01720 0.23 +0.2 381,113 + PS417_01720 0.23 -2.7 381,114 - PS417_01720 0.23 +1.4 381,114 - PS417_01720 0.23 -0.6 381,114 - PS417_01720 0.23 +1.5 381,114 - PS417_01720 0.23 -0.3 381,114 - PS417_01720 0.23 -1.6 381,143 + PS417_01720 0.25 -0.3 381,144 - PS417_01720 0.25 -2.4 381,176 + PS417_01720 0.27 +1.0 381,177 - +1.4 381,209 + PS417_01720 0.29 -0.0 381,209 + PS417_01720 0.29 -0.0 381,210 - PS417_01720 0.29 -1.1
Or see this region's nucleotide sequence