Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01695 and PS417_01700 are separated by 30 nucleotides PS417_01700 and PS417_01705 are separated by 116 nucleotides PS417_01705 and PS417_01710 are separated by 108 nucleotides PS417_01710 and PS417_01715 overlap by 4 nucleotides
PS417_01695: PS417_01695 - hypothetical protein, at 376,573 to 376,827
_01695
PS417_01700: PS417_01700 - lipocalin, at 376,858 to 377,427
_01700
PS417_01705: PS417_01705 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) , at 377,544 to 378,908
_01705
PS417_01710: PS417_01710 - histidine utilization repressor, at 379,017 to 379,766
_01710
PS417_01715: PS417_01715 - hypothetical protein, at 379,763 to 380,323
_01715
Position (kb)
377
378
379 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 376.826 kb on - strand at 376.826 kb on - strand at 376.826 kb on - strand at 376.985 kb on - strand, within PS417_01700 at 377.067 kb on + strand, within PS417_01700 at 377.068 kb on - strand, within PS417_01700 at 377.179 kb on - strand, within PS417_01700 at 377.222 kb on - strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.233 kb on + strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.234 kb on - strand, within PS417_01700 at 377.248 kb on + strand, within PS417_01700 at 377.284 kb on + strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.285 kb on - strand, within PS417_01700 at 377.365 kb on + strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.366 kb on - strand, within PS417_01700 at 377.545 kb on + strand at 377.563 kb on - strand at 377.565 kb on + strand at 377.565 kb on + strand at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.937 kb on + strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 377.938 kb on - strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.129 kb on + strand, within PS417_01705 at 378.361 kb on + strand, within PS417_01705 at 378.362 kb on - strand, within PS417_01705 at 378.433 kb on + strand, within PS417_01705 at 378.547 kb on + strand, within PS417_01705 at 378.548 kb on - strand, within PS417_01705 at 378.595 kb on + strand, within PS417_01705 at 378.653 kb on - strand, within PS417_01705 at 378.852 kb on + strand at 378.853 kb on - strand at 378.853 kb on - strand at 378.934 kb on + strand at 378.934 kb on + strand at 378.940 kb on + strand at 378.941 kb on - strand at 378.942 kb on + strand at 378.942 kb on + strand at 378.943 kb on - strand at 378.943 kb on - strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.944 kb on + strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.945 kb on - strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.948 kb on + strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.949 kb on - strand at 378.950 kb on + strand at 378.951 kb on - strand at 378.951 kb on - strand at 378.986 kb on + strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 378.987 kb on - strand at 379.080 kb on + strand at 379.081 kb on - strand at 379.081 kb on - strand at 379.346 kb on + strand, within PS417_01710 at 379.464 kb on - strand, within PS417_01710 at 379.516 kb on - strand, within PS417_01710 at 379.548 kb on + strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.549 kb on - strand, within PS417_01710 at 379.796 kb on + strand at 379.797 kb on - strand at 379.800 kb on + strand at 379.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 376,826 - +0.9 376,826 - +0.5 376,826 - +0.2 376,985 - PS417_01700 0.22 -1.1 377,067 + PS417_01700 0.37 -0.4 377,068 - PS417_01700 0.37 -0.7 377,179 - PS417_01700 0.56 +0.2 377,222 - PS417_01700 0.64 -2.4 377,233 + PS417_01700 0.66 -0.1 377,233 + PS417_01700 0.66 -1.5 377,234 - PS417_01700 0.66 +0.9 377,234 - PS417_01700 0.66 -2.1 377,234 - PS417_01700 0.66 -0.9 377,234 - PS417_01700 0.66 -0.0 377,234 - PS417_01700 0.66 -0.5 377,234 - PS417_01700 0.66 +0.7 377,234 - PS417_01700 0.66 -2.7 377,248 + PS417_01700 0.68 +0.5 377,284 + PS417_01700 0.75 +0.7 377,285 - PS417_01700 0.75 -0.1 377,285 - PS417_01700 0.75 -3.6 377,365 + PS417_01700 0.89 -1.7 377,366 - PS417_01700 0.89 +0.0 377,366 - PS417_01700 0.89 +0.4 377,545 + +1.5 377,563 - +1.3 377,565 + -0.1 377,565 + -1.4 377,937 + PS417_01705 0.29 +0.1 377,937 + PS417_01705 0.29 +4.5 377,937 + PS417_01705 0.29 -0.4 377,937 + PS417_01705 0.29 -0.1 377,938 - PS417_01705 0.29 -0.5 377,938 - PS417_01705 0.29 -3.2 377,938 - PS417_01705 0.29 -1.2 377,938 - PS417_01705 0.29 -0.8 377,938 - PS417_01705 0.29 -2.9 378,129 + PS417_01705 0.43 +1.2 378,129 + PS417_01705 0.43 -0.6 378,129 + PS417_01705 0.43 -3.4 378,361 + PS417_01705 0.60 -1.4 378,362 - PS417_01705 0.60 +0.1 378,433 + PS417_01705 0.65 -1.9 378,547 + PS417_01705 0.73 +0.5 378,548 - PS417_01705 0.74 -3.1 378,595 + PS417_01705 0.77 -2.3 378,653 - PS417_01705 0.81 -0.0 378,852 + -2.6 378,853 - -0.2 378,853 - +0.5 378,934 + +0.4 378,934 + -1.3 378,940 + -0.6 378,941 - -0.2 378,942 + +0.7 378,942 + +0.2 378,943 - -4.5 378,943 - -2.9 378,944 + +0.2 378,944 + +0.5 378,944 + -1.7 378,944 + -0.9 378,945 - +0.0 378,945 - +1.2 378,945 - -0.7 378,945 - +0.3 378,948 + -0.4 378,948 + -2.0 378,948 + -0.2 378,948 + -0.8 378,949 - -2.7 378,949 - -0.5 378,949 - -1.2 378,950 + +1.2 378,951 - +2.4 378,951 - +0.2 378,986 + +0.2 378,987 - -2.4 378,987 - -2.1 378,987 - -1.4 378,987 - +0.5 379,080 + -1.9 379,081 - -0.7 379,081 - -0.6 379,346 + PS417_01710 0.44 -0.3 379,464 - PS417_01710 0.60 -0.8 379,516 - PS417_01710 0.67 -2.5 379,548 + PS417_01710 0.71 +0.0 379,549 - PS417_01710 0.71 -0.2 379,549 - PS417_01710 0.71 -2.6 379,796 + -1.1 379,797 - +0.6 379,800 + +0.6 379,801 - -0.7
Or see this region's nucleotide sequence