Strain Fitness in Pseudomonas simiae WCS417 around PS417_14635
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
---|---|---|---|---|---|
remove | |||||
3,194,959 | + | -2.9 | |||
3,194,959 | + | +0.3 | |||
3,194,960 | - | +2.1 | |||
3,195,014 | + | +0.6 | |||
3,195,014 | + | +0.6 | |||
3,195,015 | - | +0.7 | |||
3,195,050 | + | -1.3 | |||
3,195,051 | - | +0.9 | |||
3,195,103 | + | -3.8 | |||
3,195,106 | + | -2.2 | |||
3,195,171 | + | -0.7 | |||
3,195,217 | + | -0.1 | |||
3,195,217 | + | +1.6 | |||
3,195,217 | + | -0.7 | |||
3,195,318 | + | +0.6 | |||
3,195,319 | - | +0.0 | |||
3,195,378 | - | -0.6 | |||
3,195,559 | - | PS417_14630 | 0.30 | +0.6 | |
3,195,965 | + | -0.4 | |||
3,195,968 | + | -2.2 | |||
3,195,968 | + | +0.2 | |||
3,195,968 | + | +2.3 | |||
3,195,968 | + | -1.4 | |||
3,196,100 | + | PS417_14635 | 0.23 | +1.3 | |
3,196,100 | + | PS417_14635 | 0.23 | -2.8 | |
3,196,166 | + | PS417_14635 | 0.31 | +0.6 | |
3,196,386 | - | PS417_14635 | 0.55 | -0.0 | |
3,196,487 | + | PS417_14635 | 0.66 | +0.5 | |
3,196,488 | - | PS417_14635 | 0.66 | +1.3 | |
3,196,488 | - | PS417_14635 | 0.66 | +0.0 | |
3,196,718 | + | -0.1 | |||
3,196,719 | - | -0.2 | |||
3,196,813 | + | +0.7 | |||
3,196,880 | + | +0.9 | |||
3,196,915 | + | +1.4 | |||
3,197,191 | + | +1.2 | |||
3,197,191 | + | -0.4 | |||
3,197,192 | - | -3.4 |
Or see this region's nucleotide sequence