Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14580 and PS417_14585 are separated by 80 nucleotides PS417_14585 and PS417_14590 are separated by 94 nucleotides PS417_14590 and PS417_14595 overlap by 6 nucleotides
PS417_14580: PS417_14580 - saccharopine dehydrogenase, at 3,188,005 to 3,189,135
_14580
PS417_14585: PS417_14585 - MFS transporter, at 3,189,216 to 3,190,382
_14585
PS417_14590: PS417_14590 - LysR family transcriptional regulator, at 3,190,477 to 3,191,370
_14590
PS417_14595: PS417_14595 - pyrroline-5-carboxylate reductase, at 3,191,365 to 3,192,138
_14595
Position (kb)
3189
3190
3191 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3188.264 kb on + strand, within PS417_14580 at 3188.264 kb on + strand, within PS417_14580 at 3188.264 kb on + strand, within PS417_14580 at 3188.265 kb on - strand, within PS417_14580 at 3188.555 kb on - strand, within PS417_14580 at 3188.865 kb on - strand, within PS417_14580 at 3189.381 kb on - strand, within PS417_14585 at 3189.488 kb on + strand, within PS417_14585 at 3189.619 kb on - strand, within PS417_14585 at 3189.620 kb on + strand, within PS417_14585 at 3189.620 kb on + strand, within PS417_14585 at 3189.621 kb on - strand, within PS417_14585 at 3189.714 kb on - strand, within PS417_14585 at 3189.715 kb on + strand, within PS417_14585 at 3189.716 kb on - strand, within PS417_14585 at 3189.720 kb on - strand, within PS417_14585 at 3189.734 kb on + strand, within PS417_14585 at 3189.734 kb on + strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3190.224 kb on + strand, within PS417_14585 at 3190.238 kb on - strand, within PS417_14585 at 3190.238 kb on - strand, within PS417_14585 at 3190.293 kb on - strand at 3190.384 kb on + strand at 3190.435 kb on + strand at 3190.444 kb on + strand at 3190.511 kb on + strand at 3190.628 kb on + strand at 3190.628 kb on + strand, within PS417_14590 at 3190.629 kb on - strand, within PS417_14590 at 3190.875 kb on - strand, within PS417_14590 at 3191.366 kb on + strand at 3191.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 3,188,264 + PS417_14580 0.23 -3.0 3,188,264 + PS417_14580 0.23 -0.4 3,188,264 + PS417_14580 0.23 +2.2 3,188,265 - PS417_14580 0.23 +0.5 3,188,555 - PS417_14580 0.49 -2.0 3,188,865 - PS417_14580 0.76 -0.1 3,189,381 - PS417_14585 0.14 +0.1 3,189,488 + PS417_14585 0.23 +0.4 3,189,619 - PS417_14585 0.35 -0.5 3,189,620 + PS417_14585 0.35 -1.5 3,189,620 + PS417_14585 0.35 +0.7 3,189,621 - PS417_14585 0.35 +0.2 3,189,714 - PS417_14585 0.43 -0.2 3,189,715 + PS417_14585 0.43 -3.4 3,189,716 - PS417_14585 0.43 -1.4 3,189,720 - PS417_14585 0.43 -2.4 3,189,734 + PS417_14585 0.44 -2.4 3,189,734 + PS417_14585 0.44 -0.4 3,189,735 - PS417_14585 0.44 -1.4 3,189,735 - PS417_14585 0.44 +2.3 3,189,735 - PS417_14585 0.44 -1.1 3,189,735 - PS417_14585 0.44 +3.2 3,189,735 - PS417_14585 0.44 -1.0 3,189,735 - PS417_14585 0.44 -1.5 3,190,224 + PS417_14585 0.86 +0.3 3,190,238 - PS417_14585 0.88 -1.2 3,190,238 - PS417_14585 0.88 -1.1 3,190,293 - -2.2 3,190,384 + +0.6 3,190,435 + -3.2 3,190,444 + -1.6 3,190,511 + +1.7 3,190,628 + -1.0 3,190,628 + PS417_14590 0.17 -2.6 3,190,629 - PS417_14590 0.17 -2.2 3,190,875 - PS417_14590 0.45 -3.4 3,191,366 + -0.1 3,191,368 + +0.3
Or see this region's nucleotide sequence