Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13640 and PS417_13645 are separated by 30 nucleotides PS417_13645 and PS417_13650 are separated by 22 nucleotides PS417_13650 and PS417_13655 are separated by 7 nucleotides
PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804
_13640
PS417_13645: PS417_13645 - ABC transporter, at 3,002,835 to 3,003,767
_13645
PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791
_13650
PS417_13655: PS417_13655 - xylulose kinase, at 3,004,799 to 3,006,289
_13655
Position (kb)
3003
3004
3005 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3003.034 kb on - strand, within PS417_13645 at 3003.065 kb on + strand, within PS417_13645 at 3003.249 kb on + strand, within PS417_13645 at 3003.598 kb on + strand, within PS417_13645 at 3003.738 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.742 kb on - strand at 3003.759 kb on - strand at 3003.923 kb on - strand, within PS417_13650 at 3003.923 kb on - strand, within PS417_13650 at 3003.969 kb on + strand, within PS417_13650 at 3004.007 kb on - strand, within PS417_13650 at 3004.761 kb on + strand at 3004.762 kb on - strand at 3004.918 kb on + strand at 3005.081 kb on + strand, within PS417_13655 at 3005.651 kb on + strand, within PS417_13655
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 3,003,034 - PS417_13645 0.21 +0.7 3,003,065 + PS417_13645 0.25 -0.4 3,003,249 + PS417_13645 0.44 +2.5 3,003,598 + PS417_13645 0.82 -1.6 3,003,738 - +0.5 3,003,742 - -3.1 3,003,742 - -2.2 3,003,742 - -0.4 3,003,742 - -0.6 3,003,759 - -3.2 3,003,923 - PS417_13650 0.13 -2.7 3,003,923 - PS417_13650 0.13 -0.1 3,003,969 + PS417_13650 0.18 -0.7 3,004,007 - PS417_13650 0.22 -1.7 3,004,761 + -0.0 3,004,762 - +0.5 3,004,918 + +0.6 3,005,081 + PS417_13655 0.19 -3.7 3,005,651 + PS417_13655 0.57 -0.9
Or see this region's nucleotide sequence