Strain Fitness in Pseudomonas simiae WCS417 around PS417_13650

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13640 and PS417_13645 are separated by 30 nucleotidesPS417_13645 and PS417_13650 are separated by 22 nucleotidesPS417_13650 and PS417_13655 are separated by 7 nucleotides PS417_13640: PS417_13640 - ribose ABC transporter permease, at 3,001,827 to 3,002,804 _13640 PS417_13645: PS417_13645 - ABC transporter, at 3,002,835 to 3,003,767 _13645 PS417_13650: PS417_13650 - LacI family transcriptional regulator, at 3,003,790 to 3,004,791 _13650 PS417_13655: PS417_13655 - xylulose kinase, at 3,004,799 to 3,006,289 _13655 Position (kb) 3003 3004 3005Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3003.034 kb on - strand, within PS417_13645at 3003.065 kb on + strand, within PS417_13645at 3003.249 kb on + strand, within PS417_13645at 3003.598 kb on + strand, within PS417_13645at 3003.738 kb on - strandat 3003.742 kb on - strandat 3003.742 kb on - strandat 3003.742 kb on - strandat 3003.742 kb on - strandat 3003.759 kb on - strandat 3003.923 kb on - strand, within PS417_13650at 3003.923 kb on - strand, within PS417_13650at 3003.969 kb on + strand, within PS417_13650at 3004.007 kb on - strand, within PS417_13650at 3004.761 kb on + strandat 3004.762 kb on - strandat 3004.918 kb on + strandat 3005.081 kb on + strand, within PS417_13655at 3005.651 kb on + strand, within PS417_13655

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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3,003,034 - PS417_13645 0.21 +0.7
3,003,065 + PS417_13645 0.25 -0.4
3,003,249 + PS417_13645 0.44 +2.5
3,003,598 + PS417_13645 0.82 -1.6
3,003,738 - +0.5
3,003,742 - -3.1
3,003,742 - -2.2
3,003,742 - -0.4
3,003,742 - -0.6
3,003,759 - -3.2
3,003,923 - PS417_13650 0.13 -2.7
3,003,923 - PS417_13650 0.13 -0.1
3,003,969 + PS417_13650 0.18 -0.7
3,004,007 - PS417_13650 0.22 -1.7
3,004,761 + -0.0
3,004,762 - +0.5
3,004,918 + +0.6
3,005,081 + PS417_13655 0.19 -3.7
3,005,651 + PS417_13655 0.57 -0.9

Or see this region's nucleotide sequence