Strain Fitness in Pseudomonas simiae WCS417 around PS417_13340
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,931,849 | - | PS417_13335 | 0.35 | +0.0 | |
| 2,931,883 | + | PS417_13335 | 0.39 | +1.2 | |
| 2,932,452 | - | -2.4 | |||
| 2,932,664 | - | PS417_13340 | 0.14 | +2.6 | |
| 2,932,664 | - | PS417_13340 | 0.14 | +0.1 | |
| 2,932,686 | - | PS417_13340 | 0.15 | +2.6 | |
| 2,932,932 | + | PS417_13340 | 0.37 | +1.0 | |
| 2,933,050 | + | PS417_13340 | 0.47 | +1.3 | |
| 2,933,163 | + | PS417_13340 | 0.57 | +1.1 | |
| 2,933,164 | - | PS417_13340 | 0.57 | -1.0 | |
| 2,933,164 | - | PS417_13340 | 0.57 | +1.3 | |
| 2,933,167 | + | PS417_13340 | 0.57 | -2.6 | |
| 2,933,167 | + | PS417_13340 | 0.57 | +2.3 | |
| 2,933,168 | - | PS417_13340 | 0.57 | +0.9 | |
| 2,933,168 | - | PS417_13340 | 0.57 | -0.5 | |
| 2,933,168 | - | PS417_13340 | 0.57 | +0.7 | |
| 2,933,311 | + | +0.6 | |||
| 2,933,831 | + | PS417_13345 | 0.11 | -0.0 | |
| 2,934,311 | + | PS417_13345 | 0.46 | +0.2 | |
| 2,934,586 | + | PS417_13345 | 0.66 | +0.3 | |
| 2,934,586 | + | PS417_13345 | 0.66 | +0.4 |
Or see this region's nucleotide sequence