Strain Fitness in Pseudomonas simiae WCS417 around PS417_13135
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,870,485 | + | PS417_13130 | 0.56 | +1.2 | |
| 2,870,809 | - | +1.7 | |||
| 2,870,852 | + | +1.1 | |||
| 2,870,852 | + | +2.4 | |||
| 2,870,853 | - | +1.3 | |||
| 2,870,867 | - | +1.8 | |||
| 2,870,942 | + | +0.6 | |||
| 2,870,942 | + | +2.2 | |||
| 2,870,963 | + | +0.2 | |||
| 2,870,990 | - | +1.7 | |||
| 2,871,011 | - | +2.8 | |||
| 2,871,093 | + | PS417_13135 | 0.18 | -2.0 | |
| 2,871,093 | + | -0.4 | |||
| 2,871,264 | + | PS417_13135 | 0.72 | -0.1 | |
| 2,871,264 | + | PS417_13135 | 0.72 | -2.0 | |
| 2,871,268 | + | PS417_13135 | 0.73 | +0.0 | |
| 2,871,269 | - | PS417_13135 | 0.74 | +1.1 | |
| 2,871,325 | + | -2.7 | |||
| 2,871,325 | + | -1.3 | |||
| 2,871,326 | - | -0.3 | |||
| 2,871,326 | - | -0.7 | |||
| 2,871,326 | - | +1.0 | |||
| 2,871,372 | - | +0.2 | |||
| 2,871,701 | - | PS417_13140 | 0.29 | -0.1 | |
| 2,871,701 | - | +0.2 | |||
| 2,871,961 | + | PS417_13140 | 0.52 | -1.7 | |
| 2,872,150 | + | PS417_13140 | 0.68 | +1.8 |
Or see this region's nucleotide sequence