Strain Fitness in Pseudomonas simiae WCS417 around PS417_11770
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,560,399 | + | -1.1 | |||
| 2,560,400 | - | -1.6 | |||
| 2,560,621 | + | PS417_11765 | 0.27 | +0.6 | |
| 2,560,622 | - | PS417_11765 | 0.27 | -4.2 | |
| 2,560,641 | - | PS417_11765 | 0.29 | -0.3 | |
| 2,560,892 | - | PS417_11765 | 0.54 | -0.2 | |
| 2,561,075 | + | PS417_11765 | 0.73 | -1.6 | |
| 2,561,076 | - | PS417_11765 | 0.73 | +1.1 | |
| 2,561,116 | + | PS417_11765 | 0.77 | -0.5 | |
| 2,561,320 | + | +1.1 | |||
| 2,561,339 | - | +0.0 | |||
| 2,561,347 | + | +0.6 | |||
| 2,561,347 | + | +0.0 | |||
| 2,561,382 | + | +0.4 | |||
| 2,561,444 | + | +0.5 | |||
| 2,561,922 | + | PS417_11770 | 0.55 | +1.2 | |
| 2,561,922 | + | PS417_11770 | 0.55 | +3.7 | |
| 2,561,955 | + | PS417_11770 | 0.58 | +1.7 | |
| 2,561,955 | + | -1.6 | |||
| 2,562,315 | + | -1.9 | |||
| 2,562,316 | - | +0.8 | |||
| 2,562,726 | + | PS417_11775 | 0.32 | -0.5 | |
| 2,562,958 | - | PS417_11775 | 0.53 | +0.7 | |
| 2,563,097 | + | PS417_11775 | 0.65 | -0.1 | |
| 2,563,098 | - | PS417_11775 | 0.66 | +0.5 |
Or see this region's nucleotide sequence