Strain Fitness in Pseudomonas simiae WCS417 around PS417_11730
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
---|---|---|---|---|---|
remove | |||||
2,550,033 | - | PS417_11725 | 0.56 | +2.7 | |
2,550,033 | - | PS417_11725 | 0.56 | +0.2 | |
2,550,033 | - | PS417_11725 | 0.56 | -0.0 | |
2,550,176 | + | PS417_11725 | 0.67 | -2.5 | |
2,550,210 | - | PS417_11725 | 0.69 | +0.9 | |
2,550,231 | - | PS417_11725 | 0.71 | -3.1 | |
2,550,591 | - | +0.4 | |||
2,550,740 | + | -2.1 | |||
2,550,753 | + | -1.4 | |||
2,550,833 | + | +0.9 | |||
2,551,253 | - | PS417_11730 | 0.30 | +1.0 | |
2,551,290 | + | PS417_11730 | 0.32 | +0.7 | |
2,551,290 | + | PS417_11730 | 0.32 | -3.6 | |
2,551,785 | - | PS417_11730 | 0.62 | -1.7 | |
2,551,988 | + | PS417_11730 | 0.75 | +0.9 | |
2,552,377 | - | -1.9 | |||
2,552,702 | + | PS417_11735 | 0.13 | -3.2 | |
2,552,702 | + | PS417_11735 | 0.13 | +0.1 | |
2,553,143 | + | PS417_11735 | 0.48 | -0.8 | |
2,553,200 | + | PS417_11735 | 0.53 | -1.9 | |
2,553,213 | - | PS417_11735 | 0.54 | -1.3 |
Or see this region's nucleotide sequence