Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11200 and PS417_11205 are separated by 112 nucleotides PS417_11205 and PS417_11210 are separated by 101 nucleotides PS417_11210 and PS417_11215 are separated by 55 nucleotides
PS417_11200: PS417_11200 - membrane protein, at 2,401,876 to 2,403,108
_11200
PS417_11205: PS417_11205 - LysR family transcriptional regulator, at 2,403,221 to 2,404,096
_11205
PS417_11210: PS417_11210 - LysR family transcriptional regulator, at 2,404,198 to 2,404,584
_11210
PS417_11215: PS417_11215 - arylesterase, at 2,404,640 to 2,405,458
_11215
Position (kb)
2403
2404
2405 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2402.405 kb on + strand, within PS417_11200 at 2402.405 kb on + strand, within PS417_11200 at 2402.406 kb on - strand, within PS417_11200 at 2402.406 kb on - strand, within PS417_11200 at 2402.457 kb on - strand, within PS417_11200 at 2402.475 kb on - strand, within PS417_11200 at 2403.006 kb on + strand at 2403.007 kb on - strand at 2403.199 kb on - strand at 2403.729 kb on - strand, within PS417_11205 at 2404.271 kb on + strand, within PS417_11210 at 2404.931 kb on + strand, within PS417_11215 at 2404.993 kb on + strand, within PS417_11215 at 2405.065 kb on - strand, within PS417_11215
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 2,402,405 + PS417_11200 0.43 -0.1 2,402,405 + PS417_11200 0.43 -2.2 2,402,406 - PS417_11200 0.43 +0.3 2,402,406 - PS417_11200 0.43 +0.3 2,402,457 - PS417_11200 0.47 -1.4 2,402,475 - PS417_11200 0.49 -0.8 2,403,006 + -0.1 2,403,007 - +1.6 2,403,199 - -1.2 2,403,729 - PS417_11205 0.58 -1.2 2,404,271 + PS417_11210 0.19 -1.6 2,404,931 + PS417_11215 0.36 +1.1 2,404,993 + PS417_11215 0.43 -1.0 2,405,065 - PS417_11215 0.52 +1.9
Or see this region's nucleotide sequence