Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01090 and PS417_01095 are separated by 371 nucleotides PS417_01095 and PS417_01100 are separated by 3 nucleotides PS417_01100 and PS417_01105 overlap by 1 nucleotides
PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937
_01090
PS417_01095: PS417_01095 - amino acid ABC transporter ATP-binding protein, at 240,309 to 241,055
_01095
PS417_01100: PS417_01100 - amino acid ABC transporter permease, at 241,059 to 241,724
_01100
PS417_01105: PS417_01105 - cystine transporter subunit, at 241,724 to 242,518
_01105
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.377 kb on + strand, within PS417_01090 at 239.378 kb on - strand, within PS417_01090 at 239.591 kb on + strand, within PS417_01090 at 239.592 kb on - strand, within PS417_01090 at 239.635 kb on + strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.687 kb on + strand, within PS417_01090 at 239.838 kb on - strand, within PS417_01090 at 239.938 kb on - strand at 239.941 kb on + strand at 239.941 kb on + strand at 239.942 kb on - strand at 239.991 kb on + strand at 240.061 kb on + strand at 240.062 kb on - strand at 240.062 kb on - strand at 240.176 kb on + strand at 240.202 kb on - strand at 240.245 kb on - strand at 240.263 kb on + strand at 240.282 kb on + strand at 240.567 kb on + strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 241.138 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.499 kb on - strand, within PS417_01100 at 241.501 kb on + strand, within PS417_01100 at 241.502 kb on - strand, within PS417_01100 at 241.552 kb on + strand, within PS417_01100 at 241.749 kb on + strand at 241.995 kb on + strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.044 kb on - strand, within PS417_01105
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 239,318 + PS417_01090 0.19 +0.6 239,318 + PS417_01090 0.19 -1.1 239,318 + PS417_01090 0.19 -0.5 239,377 + PS417_01090 0.27 +1.4 239,378 - PS417_01090 0.27 -1.0 239,591 + PS417_01090 0.55 -1.7 239,592 - PS417_01090 0.55 +1.9 239,635 + PS417_01090 0.60 +0.2 239,636 - PS417_01090 0.61 -1.7 239,636 - PS417_01090 0.61 -0.0 239,636 - PS417_01090 0.61 -2.1 239,636 - PS417_01090 0.61 +2.3 239,687 + PS417_01090 0.67 -0.8 239,838 - PS417_01090 0.87 -0.5 239,938 - +1.7 239,941 + +0.1 239,941 + -0.3 239,942 - +0.3 239,991 + -2.6 240,061 + +0.7 240,062 - +1.2 240,062 - -1.6 240,176 + -2.1 240,202 - -0.1 240,245 - +0.2 240,263 + +0.4 240,282 + -0.1 240,567 + PS417_01095 0.35 -2.7 240,568 - PS417_01095 0.35 +0.4 240,568 - PS417_01095 0.35 -3.2 241,138 + PS417_01100 0.12 +2.4 241,159 + PS417_01100 0.15 -0.2 241,159 + PS417_01100 0.15 -1.8 241,159 + PS417_01100 0.15 +0.7 241,160 - PS417_01100 0.15 -1.3 241,160 - PS417_01100 0.15 -0.8 241,160 - PS417_01100 0.15 +0.8 241,499 - PS417_01100 0.66 +1.2 241,501 + PS417_01100 0.66 +0.4 241,502 - PS417_01100 0.67 -2.0 241,552 + PS417_01100 0.74 -2.3 241,749 + +1.7 241,995 + PS417_01105 0.34 -0.3 241,996 - PS417_01105 0.34 -0.8 241,996 - PS417_01105 0.34 -0.1 241,996 - PS417_01105 0.34 -0.2 242,043 + PS417_01105 0.40 +1.1 242,043 + PS417_01105 0.40 +1.5 242,043 + PS417_01105 0.40 -0.3 242,044 - PS417_01105 0.40 -1.3
Or see this region's nucleotide sequence