Strain Fitness in Pseudomonas simiae WCS417 around PS417_10395

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10380 and PS417_10385 are separated by 96 nucleotidesPS417_10385 and PS417_10390 are separated by 35 nucleotidesPS417_10390 and PS417_10395 are separated by 79 nucleotidesPS417_10395 and PS417_10400 are separated by 226 nucleotides PS417_10380: PS417_10380 - catalase, at 2,220,706 to 2,222,139 _10380 PS417_10385: PS417_10385 - peroxiredoxin, at 2,222,236 to 2,222,652 _10385 PS417_10390: PS417_10390 - RNA polymerase subunit sigma24, at 2,222,688 to 2,223,059 _10390 PS417_10395: PS417_10395 - amidase, at 2,223,139 to 2,223,918 _10395 PS417_10400: PS417_10400 - membrane protein, at 2,224,145 to 2,225,212 _10400 Position (kb) 2223 2224Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2222.215 kb on + strandat 2222.216 kb on - strandat 2222.285 kb on + strand, within PS417_10385at 2222.523 kb on + strand, within PS417_10385at 2222.627 kb on + strandat 2222.690 kb on - strandat 2222.690 kb on - strandat 2222.691 kb on + strandat 2222.691 kb on + strandat 2222.691 kb on + strandat 2222.692 kb on - strandat 2222.736 kb on - strand, within PS417_10390at 2222.763 kb on - strandat 2222.908 kb on + strand, within PS417_10390at 2222.909 kb on - strand, within PS417_10390at 2223.192 kb on + strandat 2223.357 kb on + strand, within PS417_10395at 2223.358 kb on - strand, within PS417_10395at 2223.545 kb on + strand, within PS417_10395at 2223.545 kb on + strand, within PS417_10395at 2223.546 kb on - strand, within PS417_10395at 2223.546 kb on - strand, within PS417_10395at 2223.703 kb on + strand, within PS417_10395at 2223.704 kb on - strand, within PS417_10395at 2223.910 kb on + strandat 2223.911 kb on - strandat 2224.050 kb on - strandat 2224.050 kb on - strandat 2224.050 kb on - strandat 2224.095 kb on + strandat 2224.109 kb on + strandat 2224.151 kb on - strandat 2224.490 kb on + strand, within PS417_10400at 2224.652 kb on + strand, within PS417_10400at 2224.653 kb on - strand, within PS417_10400at 2224.662 kb on - strand, within PS417_10400at 2224.697 kb on - strand, within PS417_10400at 2224.697 kb on - strand, within PS417_10400at 2224.697 kb on - strand, within PS417_10400

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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2,222,215 + -0.0
2,222,216 - -0.3
2,222,285 + PS417_10385 0.12 +0.7
2,222,523 + PS417_10385 0.69 -1.5
2,222,627 + +0.3
2,222,690 - -0.0
2,222,690 - +1.4
2,222,691 + -2.0
2,222,691 + +0.1
2,222,691 + -0.3
2,222,692 - -2.6
2,222,736 - PS417_10390 0.13 +1.2
2,222,763 - -1.1
2,222,908 + PS417_10390 0.59 +0.3
2,222,909 - PS417_10390 0.59 +0.3
2,223,192 + +0.9
2,223,357 + PS417_10395 0.28 -0.1
2,223,358 - PS417_10395 0.28 -2.8
2,223,545 + PS417_10395 0.52 +0.2
2,223,545 + PS417_10395 0.52 +2.8
2,223,546 - PS417_10395 0.52 -0.2
2,223,546 - PS417_10395 0.52 +1.2
2,223,703 + PS417_10395 0.72 +1.3
2,223,704 - PS417_10395 0.72 +0.1
2,223,910 + -1.5
2,223,911 - +0.3
2,224,050 - +0.5
2,224,050 - -2.3
2,224,050 - -0.7
2,224,095 + +1.9
2,224,109 + -2.0
2,224,151 - -0.7
2,224,490 + PS417_10400 0.32 -1.5
2,224,652 + PS417_10400 0.47 +0.3
2,224,653 - PS417_10400 0.48 -1.0
2,224,662 - PS417_10400 0.48 +0.6
2,224,697 - PS417_10400 0.52 +0.4
2,224,697 - PS417_10400 0.52 -1.0
2,224,697 - PS417_10400 0.52 -0.5

Or see this region's nucleotide sequence