Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10380 and PS417_10385 are separated by 96 nucleotides PS417_10385 and PS417_10390 are separated by 35 nucleotides PS417_10390 and PS417_10395 are separated by 79 nucleotides PS417_10395 and PS417_10400 are separated by 226 nucleotides
PS417_10380: PS417_10380 - catalase, at 2,220,706 to 2,222,139
_10380
PS417_10385: PS417_10385 - peroxiredoxin, at 2,222,236 to 2,222,652
_10385
PS417_10390: PS417_10390 - RNA polymerase subunit sigma24, at 2,222,688 to 2,223,059
_10390
PS417_10395: PS417_10395 - amidase, at 2,223,139 to 2,223,918
_10395
PS417_10400: PS417_10400 - membrane protein, at 2,224,145 to 2,225,212
_10400
Position (kb)
2223
2224 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2222.215 kb on + strand at 2222.216 kb on - strand at 2222.285 kb on + strand, within PS417_10385 at 2222.523 kb on + strand, within PS417_10385 at 2222.627 kb on + strand at 2222.690 kb on - strand at 2222.690 kb on - strand at 2222.691 kb on + strand at 2222.691 kb on + strand at 2222.691 kb on + strand at 2222.692 kb on - strand at 2222.736 kb on - strand, within PS417_10390 at 2222.763 kb on - strand at 2222.908 kb on + strand, within PS417_10390 at 2222.909 kb on - strand, within PS417_10390 at 2223.192 kb on + strand at 2223.357 kb on + strand, within PS417_10395 at 2223.358 kb on - strand, within PS417_10395 at 2223.545 kb on + strand, within PS417_10395 at 2223.545 kb on + strand, within PS417_10395 at 2223.546 kb on - strand, within PS417_10395 at 2223.546 kb on - strand, within PS417_10395 at 2223.703 kb on + strand, within PS417_10395 at 2223.704 kb on - strand, within PS417_10395 at 2223.910 kb on + strand at 2223.911 kb on - strand at 2224.050 kb on - strand at 2224.050 kb on - strand at 2224.050 kb on - strand at 2224.095 kb on + strand at 2224.109 kb on + strand at 2224.151 kb on - strand at 2224.490 kb on + strand, within PS417_10400 at 2224.652 kb on + strand, within PS417_10400 at 2224.653 kb on - strand, within PS417_10400 at 2224.662 kb on - strand, within PS417_10400 at 2224.697 kb on - strand, within PS417_10400 at 2224.697 kb on - strand, within PS417_10400 at 2224.697 kb on - strand, within PS417_10400
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol% remove 2,222,215 + -0.0 2,222,216 - -0.3 2,222,285 + PS417_10385 0.12 +0.7 2,222,523 + PS417_10385 0.69 -1.5 2,222,627 + +0.3 2,222,690 - -0.0 2,222,690 - +1.4 2,222,691 + -2.0 2,222,691 + +0.1 2,222,691 + -0.3 2,222,692 - -2.6 2,222,736 - PS417_10390 0.13 +1.2 2,222,763 - -1.1 2,222,908 + PS417_10390 0.59 +0.3 2,222,909 - PS417_10390 0.59 +0.3 2,223,192 + +0.9 2,223,357 + PS417_10395 0.28 -0.1 2,223,358 - PS417_10395 0.28 -2.8 2,223,545 + PS417_10395 0.52 +0.2 2,223,545 + PS417_10395 0.52 +2.8 2,223,546 - PS417_10395 0.52 -0.2 2,223,546 - PS417_10395 0.52 +1.2 2,223,703 + PS417_10395 0.72 +1.3 2,223,704 - PS417_10395 0.72 +0.1 2,223,910 + -1.5 2,223,911 - +0.3 2,224,050 - +0.5 2,224,050 - -2.3 2,224,050 - -0.7 2,224,095 + +1.9 2,224,109 + -2.0 2,224,151 - -0.7 2,224,490 + PS417_10400 0.32 -1.5 2,224,652 + PS417_10400 0.47 +0.3 2,224,653 - PS417_10400 0.48 -1.0 2,224,662 - PS417_10400 0.48 +0.6 2,224,697 - PS417_10400 0.52 +0.4 2,224,697 - PS417_10400 0.52 -1.0 2,224,697 - PS417_10400 0.52 -0.5
Or see this region's nucleotide sequence