Strain Fitness in Pseudomonas simiae WCS417 around PS417_08795
Experiment: methylglyoxal 0.032 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.032 vol% |
---|---|---|---|---|---|
remove | |||||
1,912,543 | + | PS417_08790 | 0.44 | +0.3 | |
1,912,543 | + | PS417_08790 | 0.44 | +0.1 | |
1,912,745 | + | PS417_08790 | 0.59 | -1.6 | |
1,912,862 | - | PS417_08790 | 0.67 | -2.4 | |
1,912,890 | - | PS417_08790 | 0.69 | +0.5 | |
1,913,563 | + | PS417_08795 | 0.19 | +1.2 | |
1,913,563 | + | PS417_08795 | 0.19 | +4.3 | |
1,914,064 | + | PS417_08795 | 0.58 | -0.1 | |
1,914,064 | + | PS417_08795 | 0.58 | -0.2 | |
1,914,066 | + | PS417_08795 | 0.58 | +1.4 | |
1,914,067 | - | PS417_08795 | 0.58 | +0.4 | |
1,914,067 | - | PS417_08795 | 0.58 | +1.1 | |
1,914,599 | + | +0.1 | |||
1,914,600 | - | -1.9 | |||
1,914,600 | - | -0.3 | |||
1,914,625 | - | -1.1 | |||
1,914,625 | - | +1.0 | |||
1,915,326 | + | PS417_08800 | 0.61 | -0.2 |
Or see this region's nucleotide sequence