Strain Fitness in Pseudomonas simiae WCS417 around PS417_07835

Experiment: methylglyoxal 0.032 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.032 vol%
1,719,980	+		PS417_07830	0.53	+1.8
1,719,980	+		PS417_07830	0.53	+1.6
1,719,981	-		PS417_07830	0.53	+0.4
1,719,981	-		PS417_07830	0.53	-0.2
1,719,981	-		PS417_07830	0.53	+0.6
1,720,031	+		PS417_07830	0.56	+0.2
1,720,121	+		PS417_07830	0.62	+0.0
1,720,200	+		PS417_07830	0.67	+0.2
1,720,207	+		PS417_07830	0.68	+0.8
1,720,208	-		PS417_07830	0.68	+0.7
1,720,251	+		PS417_07830	0.70	+1.6
1,720,251	+		PS417_07830	0.70	+0.4
1,720,251	+		PS417_07830	0.70	+1.7
1,720,251	+		PS417_07830	0.70	-2.2
1,720,252	-		PS417_07830	0.70	+1.0
1,720,252	-		PS417_07830	0.70	+1.0
1,720,252	-		PS417_07830	0.70	+1.5
1,720,252	-		PS417_07830	0.70	+1.7
1,720,252	-		PS417_07830	0.70	-2.5
1,720,252	-		PS417_07830	0.70	+0.4
1,720,253	+		PS417_07830	0.71	+0.4
1,720,253	+		PS417_07830	0.71	-0.1
1,720,341	+		PS417_07830	0.76	+0.4
1,720,341	+		PS417_07830	0.76	+0.2
1,720,341	+		PS417_07830	0.76	+3.3
1,720,341	+		PS417_07830	0.76	-1.2
1,720,342	-		PS417_07830	0.76	-0.5
1,720,418	-		PS417_07830	0.81	+1.8
1,720,443	-				-1.8
1,720,474	+		PS417_07830	0.85	-1.2
1,720,553	-				+0.5
1,720,619	+				+0.4
1,720,619	+				-2.6
1,720,635	+				+2.0
1,720,636	-				+0.4
1,720,704	-				-1.0
1,720,734	+				-4.0
1,720,735	-				+1.5
1,720,735	-				+0.8
1,720,757	-				-1.0
1,720,757	-				-1.0
1,720,757	-				-3.6
1,720,784	+				+0.0
1,720,785	-				+0.9
1,720,810	+				-1.5
1,720,811	-				+0.8
1,720,811	-				-1.8
1,720,826	+				-2.2
1,720,826	+				-0.2
1,720,826	+				-0.4
1,720,826	+				+0.9
1,720,827	-				+2.0
1,720,827	-				-3.8
1,720,843	+				-0.9
1,721,007	+		PS417_07835	0.22	-0.2
1,721,106	-		PS417_07835	0.46	+1.1
1,721,141	+		PS417_07835	0.55	-2.9
1,721,143	+		PS417_07835	0.55	+0.5
1,721,144	-		PS417_07835	0.55	+0.5
1,721,144	-		PS417_07835	0.55	+0.8
1,721,144	-		PS417_07835	0.55	+2.0
1,721,158	+		PS417_07835	0.59	+0.9
1,721,158	+		PS417_07835	0.59	-0.6
1,721,158	+		PS417_07835	0.59	+0.2
1,721,159	-		PS417_07835	0.59	-2.6
1,721,159	-		PS417_07835	0.59	+1.3
1,721,159	-				+0.0
1,721,238	+		PS417_07835	0.78	+1.2
1,721,238	+		PS417_07835	0.78	+1.2
1,721,239	-		PS417_07835	0.78	-1.1
1,721,239	-		PS417_07835	0.78	+0.1
1,721,269	+		PS417_07835	0.86	+1.8
1,721,290	-				+0.0
1,721,302	+				-1.2
1,721,303	-				+0.7
1,721,325	+				+1.5
1,721,341	+				+0.3
1,721,348	+				+1.8
1,721,361	+				-3.9
1,721,396	+				-1.3
1,721,396	+				+0.3
1,721,401	-				-0.7
1,721,429	-				-1.1
1,721,440	-				-0.6
1,721,449	-				-1.0
1,721,464	+				-1.0
1,721,465	-				-0.7
1,721,465	-				-1.3
1,721,469	-				-1.1
1,721,481	-				-3.1
1,721,519	+				+0.0
1,721,528	+				+2.2
1,721,528	+				-2.0
1,721,529	-				-0.3
1,721,529	-				+1.6
1,721,623	+				+0.2
1,721,623	+				+0.8
1,721,624	-				-0.3
1,721,639	-				-2.0
1,721,641	-				+0.2
1,721,664	+				-1.2
1,721,664	+				+0.6
1,721,665	-				-1.0
1,721,665	-				+1.1
1,721,665	-				-0.3
1,721,684	-				-1.8
1,721,725	+				-2.5
1,721,759	+				+0.7
1,721,759	+				+0.2
1,721,872	+		PS417_07840	0.53	+2.4
1,721,873	-		PS417_07840	0.53	-0.1
1,721,879	+		PS417_07840	0.56	+1.8
1,721,879	+		PS417_07840	0.56	+1.8
1,721,879	+		PS417_07840	0.56	+1.5
1,721,880	-		PS417_07840	0.56	-0.3
1,721,880	-		PS417_07840	0.56	+0.0
1,721,955	+				+1.7
1,722,030	-				+0.2
1,722,056	+				+1.8
1,722,056	+				-1.0
1,722,069	+				+2.5
1,722,070	-				+0.0
1,722,089	+				+2.4
1,722,089	+				-2.0
1,722,089	+				+1.2
1,722,115	+				+1.0
1,722,125	-				+0.1
1,722,131	+				-0.1
1,722,171	+				-1.0
1,722,171	+				-0.7
1,722,172	-				+0.0
1,722,173	+				+0.0
1,722,174	-				+1.5
1,722,174	-				-3.2