Strain Fitness in Pseudomonas simiae WCS417 around PS417_07805

Experiment: methylglyoxal 0.032 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07800 and PS417_07805 are separated by 119 nucleotidesPS417_07805 and PS417_07810 are separated by 87 nucleotides PS417_07800: PS417_07800 - hypothetical protein, at 1,715,073 to 1,716,020 _07800 PS417_07805: PS417_07805 - hypothetical protein, at 1,716,140 to 1,716,850 _07805 PS417_07810: PS417_07810 - hypothetical protein, at 1,716,938 to 1,717,813 _07810 Position (kb) 1716 1717Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1715.142 kb on + strandat 1715.143 kb on - strandat 1715.143 kb on - strandat 1715.243 kb on + strand, within PS417_07800at 1715.243 kb on + strand, within PS417_07800at 1715.243 kb on + strand, within PS417_07800at 1715.254 kb on + strand, within PS417_07800at 1715.255 kb on - strand, within PS417_07800at 1715.298 kb on + strand, within PS417_07800at 1715.299 kb on - strand, within PS417_07800at 1715.356 kb on + strand, within PS417_07800at 1715.357 kb on - strand, within PS417_07800at 1715.357 kb on - strand, within PS417_07800at 1715.357 kb on - strand, within PS417_07800at 1715.357 kb on - strand, within PS417_07800at 1715.366 kb on - strand, within PS417_07800at 1715.421 kb on + strand, within PS417_07800at 1715.421 kb on + strand, within PS417_07800at 1715.422 kb on - strand, within PS417_07800at 1715.422 kb on - strand, within PS417_07800at 1715.428 kb on - strand, within PS417_07800at 1715.486 kb on + strand, within PS417_07800at 1715.487 kb on - strand, within PS417_07800at 1715.521 kb on + strand, within PS417_07800at 1715.576 kb on - strandat 1715.611 kb on - strand, within PS417_07800at 1715.643 kb on + strandat 1715.643 kb on + strand, within PS417_07800at 1715.643 kb on + strand, within PS417_07800at 1715.643 kb on + strand, within PS417_07800at 1715.643 kb on + strand, within PS417_07800at 1715.643 kb on + strand, within PS417_07800at 1715.644 kb on - strand, within PS417_07800at 1715.644 kb on - strand, within PS417_07800at 1715.644 kb on - strand, within PS417_07800at 1715.745 kb on + strand, within PS417_07800at 1715.750 kb on + strand, within PS417_07800at 1715.783 kb on - strand, within PS417_07800at 1715.788 kb on + strand, within PS417_07800at 1715.789 kb on - strand, within PS417_07800at 1715.789 kb on - strand, within PS417_07800at 1715.789 kb on - strand, within PS417_07800at 1715.868 kb on - strand, within PS417_07800at 1715.937 kb on + strandat 1715.949 kb on - strandat 1715.949 kb on - strandat 1715.969 kb on + strandat 1715.969 kb on + strandat 1715.970 kb on - strandat 1715.970 kb on - strandat 1716.027 kb on + strandat 1716.027 kb on + strandat 1716.027 kb on + strandat 1716.038 kb on + strandat 1716.038 kb on + strandat 1716.038 kb on + strandat 1716.038 kb on + strandat 1716.039 kb on - strandat 1716.039 kb on - strandat 1716.161 kb on + strandat 1716.166 kb on + strandat 1716.166 kb on + strandat 1716.246 kb on + strand, within PS417_07805at 1716.246 kb on + strand, within PS417_07805at 1716.246 kb on + strand, within PS417_07805at 1716.246 kb on + strandat 1716.246 kb on + strand, within PS417_07805at 1716.247 kb on - strand, within PS417_07805at 1716.247 kb on - strand, within PS417_07805at 1716.292 kb on + strand, within PS417_07805at 1716.292 kb on + strand, within PS417_07805at 1716.293 kb on - strand, within PS417_07805at 1716.293 kb on - strand, within PS417_07805at 1716.295 kb on + strand, within PS417_07805at 1716.296 kb on - strand, within PS417_07805at 1716.352 kb on - strand, within PS417_07805at 1716.367 kb on + strand, within PS417_07805at 1716.367 kb on + strand, within PS417_07805at 1716.368 kb on - strand, within PS417_07805at 1716.660 kb on - strandat 1716.691 kb on + strand, within PS417_07805at 1716.726 kb on + strand, within PS417_07805at 1716.728 kb on + strand, within PS417_07805at 1716.732 kb on + strand, within PS417_07805at 1716.733 kb on - strand, within PS417_07805at 1716.733 kb on - strand, within PS417_07805at 1716.733 kb on - strandat 1716.733 kb on - strand, within PS417_07805at 1716.768 kb on + strand, within PS417_07805at 1716.768 kb on + strand, within PS417_07805at 1716.768 kb on + strand, within PS417_07805at 1716.768 kb on + strand, within PS417_07805at 1716.808 kb on + strandat 1716.848 kb on + strandat 1716.997 kb on + strandat 1716.997 kb on + strandat 1716.997 kb on + strandat 1716.998 kb on - strandat 1717.139 kb on + strand, within PS417_07810at 1717.140 kb on - strand, within PS417_07810at 1717.142 kb on - strand, within PS417_07810at 1717.142 kb on - strand, within PS417_07810at 1717.142 kb on - strand, within PS417_07810at 1717.154 kb on + strand, within PS417_07810at 1717.207 kb on + strand, within PS417_07810at 1717.297 kb on + strand, within PS417_07810at 1717.348 kb on + strand, within PS417_07810at 1717.354 kb on + strand, within PS417_07810at 1717.355 kb on - strand, within PS417_07810at 1717.392 kb on + strand, within PS417_07810at 1717.426 kb on + strand, within PS417_07810at 1717.477 kb on + strand, within PS417_07810at 1717.477 kb on + strand, within PS417_07810at 1717.498 kb on + strand, within PS417_07810at 1717.617 kb on + strand, within PS417_07810at 1717.618 kb on - strand, within PS417_07810at 1717.618 kb on - strand, within PS417_07810at 1717.618 kb on - strand, within PS417_07810at 1717.763 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
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1,715,142 + +1.4
1,715,143 - -0.4
1,715,143 - +2.0
1,715,243 + PS417_07800 0.18 +0.3
1,715,243 + PS417_07800 0.18 +0.1
1,715,243 + PS417_07800 0.18 +3.0
1,715,254 + PS417_07800 0.19 +0.5
1,715,255 - PS417_07800 0.19 +0.6
1,715,298 + PS417_07800 0.24 -1.3
1,715,299 - PS417_07800 0.24 -4.9
1,715,356 + PS417_07800 0.30 -1.2
1,715,357 - PS417_07800 0.30 +0.2
1,715,357 - PS417_07800 0.30 +0.7
1,715,357 - PS417_07800 0.30 +0.9
1,715,357 - PS417_07800 0.30 -1.2
1,715,366 - PS417_07800 0.31 +0.4
1,715,421 + PS417_07800 0.37 +1.8
1,715,421 + PS417_07800 0.37 -0.0
1,715,422 - PS417_07800 0.37 +1.8
1,715,422 - PS417_07800 0.37 +2.1
1,715,428 - PS417_07800 0.37 +0.4
1,715,486 + PS417_07800 0.44 -0.5
1,715,487 - PS417_07800 0.44 +0.8
1,715,521 + PS417_07800 0.47 +0.3
1,715,576 - -0.6
1,715,611 - PS417_07800 0.57 -0.6
1,715,643 + -0.0
1,715,643 + PS417_07800 0.60 -0.7
1,715,643 + PS417_07800 0.60 +0.3
1,715,643 + PS417_07800 0.60 -2.3
1,715,643 + PS417_07800 0.60 -0.3
1,715,643 + PS417_07800 0.60 -1.7
1,715,644 - PS417_07800 0.60 +0.1
1,715,644 - PS417_07800 0.60 -1.0
1,715,644 - PS417_07800 0.60 -0.0
1,715,745 + PS417_07800 0.71 -0.6
1,715,750 + PS417_07800 0.71 +0.9
1,715,783 - PS417_07800 0.75 +2.0
1,715,788 + PS417_07800 0.75 +0.2
1,715,789 - PS417_07800 0.76 -0.1
1,715,789 - PS417_07800 0.76 +0.9
1,715,789 - PS417_07800 0.76 +0.7
1,715,868 - PS417_07800 0.84 +1.0
1,715,937 + +1.1
1,715,949 - +2.1
1,715,949 - -0.4
1,715,969 + -3.2
1,715,969 + +0.9
1,715,970 - -0.6
1,715,970 - -2.6
1,716,027 + +0.1
1,716,027 + -0.4
1,716,027 + +0.2
1,716,038 + -0.3
1,716,038 + -4.2
1,716,038 + +2.6
1,716,038 + +1.3
1,716,039 - +0.5
1,716,039 - -1.6
1,716,161 + -0.8
1,716,166 + -1.2
1,716,166 + -1.3
1,716,246 + PS417_07805 0.15 +1.4
1,716,246 + PS417_07805 0.15 -0.2
1,716,246 + PS417_07805 0.15 +1.5
1,716,246 + +0.0
1,716,246 + PS417_07805 0.15 -0.1
1,716,247 - PS417_07805 0.15 +0.0
1,716,247 - PS417_07805 0.15 +1.0
1,716,292 + PS417_07805 0.21 +0.1
1,716,292 + PS417_07805 0.21 +2.0
1,716,293 - PS417_07805 0.22 -0.2
1,716,293 - PS417_07805 0.22 +0.7
1,716,295 + PS417_07805 0.22 -0.3
1,716,296 - PS417_07805 0.22 +0.3
1,716,352 - PS417_07805 0.30 -2.2
1,716,367 + PS417_07805 0.32 +0.0
1,716,367 + PS417_07805 0.32 -2.7
1,716,368 - PS417_07805 0.32 +0.4
1,716,660 - +2.2
1,716,691 + PS417_07805 0.77 -1.6
1,716,726 + PS417_07805 0.82 +1.3
1,716,728 + PS417_07805 0.83 -0.5
1,716,732 + PS417_07805 0.83 +1.3
1,716,733 - PS417_07805 0.83 -0.0
1,716,733 - PS417_07805 0.83 +1.5
1,716,733 - +1.0
1,716,733 - PS417_07805 0.83 +1.6
1,716,768 + PS417_07805 0.88 -1.5
1,716,768 + PS417_07805 0.88 +0.1
1,716,768 + PS417_07805 0.88 +0.9
1,716,768 + PS417_07805 0.88 +0.8
1,716,808 + -0.9
1,716,848 + -1.5
1,716,997 + +0.1
1,716,997 + +0.7
1,716,997 + -0.3
1,716,998 - -0.1
1,717,139 + PS417_07810 0.23 -0.1
1,717,140 - PS417_07810 0.23 +1.3
1,717,142 - PS417_07810 0.23 +1.7
1,717,142 - PS417_07810 0.23 -0.4
1,717,142 - PS417_07810 0.23 +1.4
1,717,154 + PS417_07810 0.25 +0.3
1,717,207 + PS417_07810 0.31 +0.6
1,717,297 + PS417_07810 0.41 +0.0
1,717,348 + PS417_07810 0.47 -0.2
1,717,354 + PS417_07810 0.47 -0.1
1,717,355 - PS417_07810 0.48 -0.2
1,717,392 + PS417_07810 0.52 -0.3
1,717,426 + PS417_07810 0.56 +0.4
1,717,477 + PS417_07810 0.62 -0.5
1,717,477 + PS417_07810 0.62 -2.0
1,717,498 + PS417_07810 0.64 +1.2
1,717,617 + PS417_07810 0.78 -2.9
1,717,618 - PS417_07810 0.78 +0.5
1,717,618 - PS417_07810 0.78 -0.8
1,717,618 - PS417_07810 0.78 +2.4
1,717,763 + -1.6

Or see this region's nucleotide sequence