Strain Fitness in Pseudomonas simiae WCS417 around PS417_06315

Experiment: methylglyoxal 0.032 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06310 and PS417_06315 are separated by 184 nucleotidesPS417_06315 and PS417_06320 overlap by 4 nucleotidesPS417_06320 and PS417_06325 are separated by 129 nucleotides PS417_06310: PS417_06310 - enolase, at 1,402,507 to 1,403,796 _06310 PS417_06315: PS417_06315 - cell division protein FtsB, at 1,403,981 to 1,404,259 _06315 PS417_06320: PS417_06320 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,404,256 to 1,404,963 _06320 PS417_06325: PS417_06325 - LysR family transcriptional regulator, at 1,405,093 to 1,405,989 _06325 Position (kb) 1403 1404 1405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1403.767 kb on + strandat 1403.767 kb on + strandat 1403.874 kb on + strandat 1405.127 kb on - strandat 1405.184 kb on + strand, within PS417_06325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.032 vol%
remove
1,403,767 + -2.3
1,403,767 + +1.4
1,403,874 + -3.2
1,405,127 - -1.8
1,405,184 + PS417_06325 0.10 -4.4

Or see this region's nucleotide sequence